CK937012

Overview
NameCK937012
Unique NameCK937012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937012 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 4.600e-68
Identity = 131/219 (59.82%), Postives = 146/219 (66.67%), Query Frame = 1 
Query:   85 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINELPSLFEVVTGAAKKQVKEXXXXXXXXXXXXXXXXXXQRGSESHTKYSKPM---QPNXXXXXXXXXXXXXXXXTLCGACGENYASDEFWI 732
            ME G A N PRTVEEVFRDFKGRRAGMIKALTTDV+EF++ CDPEKENLCLYG P+E W                  GINFARDGM +KDWLSLVAVHSDAWLLAVAF+FGARFGFDKADRKRLFNM+N+LP++FEVV G AKKQ K+                  +RGSES  K+SKP                       T CGACGE+YA+DEFWI
Sbjct:    1 MEAGGAYN-PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKD--KSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWI 216

HSP 2 Score: 29.261 bits (64), Expect = 4.600e-68
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2 
Query:  734 CCDICEKWFH 763
            CCD+CE WFH
Sbjct:  217 CCDLCEMWFH 226
The following BLAST results are available for this feature:
BLAST of CK937012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH4.600e-6859.82PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004515_C10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937012 ID=CK937012; Name=CK937012; organism=Citrus sinensis; type=EST; length=764bp
GGGGGGGACTNNGCGAAAAATAATAANNAAAATAGTAATAAAAANNNTCA
TAATAAAAAAAAGTAAAATAAAATTTTAAAAAAAATGGAAGGAGGAGTAG
CACAGAACAATCCGCGCACAGTAGAGGAGGTGTTTAGAGATTTTAAGGGA
CGTAGAGCTGGCATGATCAAGGCTCTCACTACAGATGTTGAAGAGTTCTA
CCAGCAGTGTGATCCTGAGAAGGAGAATCTTTGCTTGTATGGCTTCCCTA
GTGAGCAATGGGAAGTAAATTTACCAGCTGAAGAAGTGCCTCCAGAGCTT
CCAGAGCCTGCATTGGGTATCAACTTTGCAAGAGATGGTATGCAAGATAA
GGATTGGTTGTCTTTGGTTGCTGTCCATAGTGATGCATGGCTGCTGGCTG
TTGCGTTTTATTTTGGTGCCAGGTTCGGATTTGATAAAGCTGACAGAAAA
CGGCTTTTTAACATGATAAATGAACTTCCATCGTTATTTGAAGTTGTAAC
TGGTGCAGCTAAGAAACAAGTTAAGGAGAAGTCATCAGTCTCAAATCATA
GTAGCAACAAATCCAAGTCACACTCCAAAGTGCAGCGAGGATCCGAATCT
CATACAAAGTATTCTAAGCCAATGCAACCAAACGATGAAGATGAGGGCAT
GGACGAGGAAGAAGAAGATGAGCATGGTGACACTTTATGCGGGGCTTGTG
GTGAGAACTATGCTTCGGATGAATTCTGGATTTTGTTGTGACATCTGCGA
GAAGTGGTTCCATG
back to top