CK936999

Overview
NameCK936999
Unique NameCK936999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2154 contig Csv1_Contig2154:700..1168. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936999 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 30/52 (57.69%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:    5 NISSVNPVTLKENASDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 160
            N+++VNPV +KE   +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct:  213 NVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264
The following BLAST results are available for this feature:
BLAST of CK936999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GEML5_ARATH2.616e-1457.69GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004515_D07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936999 ID=CK936999; Name=CK936999; organism=Citrus sinensis; type=EST; length=469bp
GGGGAATATAAGCTCAGTCAATCCAGTGACATTAAAAGAAAATGCATCAG
ACAAGTACATGAAGATTGTAACTGTGGAGGGACATGAATTTTGGTTCATG
GGCTTTGTCAATTTCGAGAAAGCAACGAACCACTTGTTGAACAGTTTGTC
AGAATACAGAGCAACTGGAAGTGCAGGGCGAGTGGGCGACCAGTAGCTGT
GTAAAATGGTTGTTGGAGCCGTCATGTGACTCAAAATTTTCTTATGCACT
GCTTTTGGTTGTTTCTTTCAGTTTGAGAATTTATAGGTTGGTTTGGTTGT
AAAGCTGTAATTGATGTGGTATTTTGTGTGTAAAGATCTGAACACAGGTC
GCTTGTGTGTTTCAATATTCAAGTGTAGAAGATCAAATTTTAAATTCAAT
TCACTTGTAATCGGCTTACGCATACGGCCGAGAATTTAAACAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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