CX675234

Overview
NameCX675234
Unique NameCX675234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10390 contig Csv1_Contig10390:1060..1969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675234 vs. ExPASy Swiss-Prot
Match: FB285_ARATH (F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.011e-71
Identity = 140/151 (92.72%), Postives = 143/151 (94.70%), Query Frame = -1
Query:  458 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 910
            TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD+DGQGVLCMNR+QLEELRVKPL+ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEVSD SWV SAFEEPY TAAKMLVKRRTYCLEMNSF
Sbjct:  248 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSE---SKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLEMNSF 395          
BLAST of CX675234 vs. ExPASy Swiss-Prot
Match: FB237_ARATH (F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.724e-71
Identity = 139/151 (92.05%), Postives = 141/151 (93.38%), Query Frame = -1
Query:  458 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 910
            TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEV D SWV SAF+EPYG AAKMLVKRRTYCLEMNSF
Sbjct:  233 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSE---SKKEVCDVSWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380          
BLAST of CX675234 vs. ExPASy Swiss-Prot
Match: FB19_ARATH (F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.784e-68
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = -1
Query:  458 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 910
            TNGGLKLRVVWTISSLIAASARHYLLQPII EHK+LD LVL+DADGQGVLCMNREQLEELRV PLSASSASKRTLVPALNMRLWYAP L+LPDG VLKGATLVAIRPSE   SKKEV D SW+  AFEEP+GT AKML+KRRTYCLEMNSF
Sbjct:  232 TNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASSASKRTLVPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE---SKKEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379          
BLAST of CX675234 vs. ExPASy Swiss-Prot
Match: FB303_ARATH (F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.271e-25
Identity = 65/156 (41.67%), Postives = 99/156 (63.46%), Query Frame = -1
Query:  458 GLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEEL-----RVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSE---QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 901
            GLK RVVWTIS+L+AAS+RHYL++ ++ EH+ ++SLV+ D + +G + MN E L+EL     RV+       +KR++VP++ M + +AP L+L  G+ L+ ATLV +RPS    +     E++  ++VG      YG A   L+K +   LEMNSF
Sbjct:  162 GLKTRVVWTISALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCKKNALEMNSF 314          
BLAST of CX675234 vs. ExPASy Swiss-Prot
Match: FB91_ARATH (F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.211e-24
Identity = 60/155 (38.71%), Postives = 96/155 (61.94%), Query Frame = -1
Query:  458 GLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPL-----SASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVS--DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 901
            GLK RVVWTIS+L+AAS RHYL++ ++ +HK ++ L++ D+DG+G + M+   ++E R   +      +    +RT+VP++ M + +AP L L  G+ L+ ATLV +RP+  ++   +V     ++ G   +  YG A   L+KRR   LEMNSF
Sbjct:  180 GLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYRETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDDNDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334          
The following BLAST results are available for this feature:
BLAST of CX675234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FB285_ARATH1.011e-7192.72F-box protein At5g46170 OS=Arabidopsis thaliana GN... [more]
FB237_ARATH1.724e-7192.05F-box protein At4g18380 OS=Arabidopsis thaliana GN... [more]
FB19_ARATH1.784e-6887.42F-box protein At1g30200 OS=Arabidopsis thaliana GN... [more]
FB303_ARATH9.271e-2541.67F-box protein At1g22220 OS=Arabidopsis thaliana GN... [more]
FB91_ARATH1.211e-2438.71F-box protein At1g78100 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60G04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60G04-M8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675234 ID=CX675234; Name=CX675234; organism=Citrus sinensis; type=EST; length=910bp
TTTTTTTTTTTTTTTTTCAGGGCTAAGGCAAACTATATTTCTCACTGAAC
TTCAAAAGTATATAACATAATCATGACATACTGATACCTACAATATACAC
AGATAAAGAGAGGTTACAGATATAAGTAAACGACTACAAACTCAAAGCTC
TTACAATATCAATCTAGTTGCATGTGCGCACTCTTACAAGCATGTGCCTG
AAATAAAACAACCATCAAATGCATTCAAACTCTCAGTTGAAGCACAGAAG
GTGAAAGATTTGATGCACGATATTGACCTATGATGGGCGTATCAGCTAGA
GTCCAAAGCATGATTTAGCTTCACAGGACGCTTCACCCAAGCTCAGCTAC
ACATAAAACAAAATTGTTTCTCTGATGATTCCCTTCCCAAAGCCAGGCAC
ATAATCTTTTCCCTTCAACCATTTTGCTTTCCCCGCAAAGCCAGAGCAAC
CTCATCAGAAAGAGTTCATCTCCAAACAGTAAGTCCTCCTCTTGACCAGC
ATCTTCGCTGCAGTCCCATACGGCTCCTCAAAAGCGGACCCAACCCAAGA
CCCATCAGAGACCTCCTTCTTGGAGGCAGATTGCTCGCTAGGCCTGATGG
CAACCAAGGTTGCACCTTTCAACACAACCCCATCAGGCAATTCCAAATAA
GGCGCATACCAAAGCCTCATATTGAGAGCTGGCACCAGCGTCCTCTTGGA
TGCAGAAGAAGCCGACAAAGGCTTCACTCTTAACTCCTCAAGCTGCTCCC
TGTTCATACACAACACTCCTTGCCCATCGGCATCAGTTAAAACCAAACTA
TCAAGAGTCTTGTGCTCTGCTATAATTGGCTGAAGCAAATAATGCCTAGC
AGATGCAGCAATTAAAGAGCTAATCGTCCACACAACACGCAACTTCAAAC
CCCCGTTGGT
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