CK936995

Overview
NameCK936995
Unique NameCK936995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.543e-85
Identity = 143/195 (73.33%), Postives = 169/195 (86.67%), Query Frame = 2
Query:  173 SSSPAFNLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            SSS   NL T+SF+E  S LFGD NL+RSPD  +VRLLL+R++GSGF+SS +Y HGF+S+MIKLP+D+TAG+ VAFYTSNGDVF KTHDELD EFLGN+ GKPWRFQTN YGNGST RGREERYRLWFDP+K+FHRYSILWT + IIF+VD+VPIREV+R+ AMG D+P+KPM+LY TIWDAS+WA SGGK K N
Sbjct:   20 SSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKAN 214          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.019e-82
Identity = 137/189 (72.49%), Postives = 161/189 (85.19%), Query Frame = 2
Query:  191 NLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            N+  I FDEG SHLFG+GNLIRSPD ++VRLLL++++GSGF+SS +Y HGFFS++IKLP  +TAG+ VAFYTSNGDVF K HDELD EFLGN+ GKPWRFQTN YGNGST RGREERYRLWFDP+K+FHRYSILWT   IIF+VD+VPIRE++R   M GD+P KPMSLY TIWDAS+WA SGGK  V+
Sbjct:   34 NINPIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVD 222          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.371e-73
Identity = 126/188 (67.02%), Postives = 152/188 (80.85%), Query Frame = 2
Query:  194 LTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            L  I FDEGY+ LFGD NLI   DGK+VRL L+  +GSGFVS+ +Y HGFFS+ IKLP+D++AG+ +AFY SNGD++ K HDE+DFEFLGN+ G+ WR QTN YGNGST  GREERY LWFDPT+ FH+YSILW+ ++IIFYVD VPIREV R+ +MGGDFP+KPMSLY+TIWD S WA  GGK  VN
Sbjct:   26 LPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVN 213          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.161e-72
Identity = 128/189 (67.72%), Postives = 148/189 (78.31%), Query Frame = 2
Query:  191 NLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            NL   SF+E Y+ LFGD NL    DGK+VRL L+  +GSGFVS+  Y HGFFSA IKLPSD+TAG+ VAFY SNGD++ K HDE+DFEFLGN+  K WR QTN YGNGST  GREERY LWFDPT+ FH+YSILW+ ++IIF+VD VPIREV R+  MGG FPSKPMSLYTTIWD S WA +GGK  VN
Sbjct:   25 NLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVN 213          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 5.246e-49
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 2
Query:  203 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            I+ + G+S  FG  N+    +G   +L L++ SG+G VS   Y++GFFSA +KLP+   +G+ VAFY SN + +PK+HDE+D E LG      W  QTN Y NGST  GREE++  WFDPT+ FH Y+++W S++ +F VD +P+R+     A    +PSKPMSLY T+WD S WA  GGK  VN
Sbjct:   41 IAIENGFSRRFGAHNI--QVNGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVN 223          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.082e-44
Identity = 91/186 (48.92%), Postives = 114/186 (61.29%), Query Frame = 2
Query:  203 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFY-TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            I FD  Y   +G  ++++   GK V+L ++  SGSGF S   Y  GFF   IKLP   +AG+  AFY TS GD    THDE+DFEFLGN  GKP   QTN + NG    GRE+++  WFDPT  FH Y ILW    I+FYVD+VPIR        G ++PSKPM L  ++W+  NWA SGGK K+N
Sbjct:   30 IDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGD----THDEVDFEFLGNRQGKPIAIQTNVFSNGQG--GREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNGENWATSGGKEKIN 209          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.635e-42
Identity = 87/199 (43.72%), Postives = 120/199 (60.30%), Query Frame = 2
Query:  164 ANASSSPAFNLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFY-TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            A A      + + + FD+ Y   +G  N+++   GK V+L L+  SGSGF S   Y  GFF   IK+P   T+G+  AFY TS G+    THDE+DFEFLGN  GK    QTN + NG     RE++  LWFDP+K FH Y+ILW    I+ YVD +P+R    +T+ G ++PSKPM +  ++W+  NWA  GGK+K+N
Sbjct:   24 ARAYEVNGIDQSKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGN----THDEVDFEFLGNKEGK-LAVQTNVFTNGKG--NREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQVVVSLWNGENWATDGGKSKIN 215          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.360e-41
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 2
Query:  182 PAFNLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGS---TARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            P+  + +++F +G+ +L+G  +  +  D   + + L+R SGSGF S K +  G+F A IKL   +TAG+  + Y SN +  P  HDE+D EFLG   GKP+  QTN Y  GS      GRE ++RLWFDPTK FH Y+ILW+   IIF VD++PIR   + +A    FP +PM LY +IWDAS+WA   GK K +
Sbjct:   34 PSSKVGSLNFYKGFRNLWGPQH--QRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSA--STFPLRPMWLYGSIWDASSWATEDGKYKAD 224          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.593e-40
Identity = 86/195 (44.10%), Postives = 115/195 (58.97%), Query Frame = 2
Query:  182 PAFNLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTAR---GREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            P+  + T  FD  +  L+G  +  R  D   V L L++ +GSGF S + Y  G+F A IKL    TAG+  + Y SN    P  HDE+D EFLG   GKP+  QTN +  GS  R   GRE ++ LWFDPT+ FH Y+ILW  N I+F+VD+VPIR   R       FP++PM +Y +IWDAS+WA   G+ K +
Sbjct:   30 PSSRVPTSPFDREFRTLWGSQHQRREQDV--VTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNE--AIFPTRPMWVYGSIWDASDWATENGRIKAD 220          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.190e-38
Identity = 81/186 (43.55%), Postives = 109/186 (58.60%), Query Frame = 2
Query:  203 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFY-TSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWAISGGKAKVN 757
            ++F + Y   +G  ++     G+ V L +++ SG GF S   Y  G F   IK+PS +T G+  AFY TS G      HDE+DFEFLGN  GKP   QTN + NG     REER+ LWF+PTK +H Y +LW    I+FYVD +PIR  V     G  +PSKPM +  ++W+  +WA  GG+ KVN
Sbjct:   33 VTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGG----GHDEIDFEFLGNNNGKPVTLQTNLFLNGEG--NREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIR--VYKNENGVSYPSKPMQVEASLWNGDDWATDGGRTKVN 210          
The following BLAST results are available for this feature:
BLAST of CK936995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH30_ARATH4.543e-8573.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH8.019e-8272.49Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.371e-7367.02Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.161e-7267.72Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH5.246e-4947.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH5.082e-4448.92Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.635e-4243.72Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH2.360e-4144.62Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH7.593e-4044.10Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH3.190e-3843.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004515_E11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936995 ID=CK936995; Name=CK936995; organism=Citrus sinensis; type=EST; length=757bp
GGGGAGAAACCAACACACAGCGTAACAAATTTTTATTTATAGAAACCAAA
AAATAATTATGGATTGGTTTCTTTGCTCTCAATCAAAAAAATCATCAGCA
CCCTTCACTCTAATTCTAATTCTGTTGTGTTGCTGCTCATCACCATCACT
TGTGTTCACATTCGCAAACGCATCATCATCACCTGCTTTCAACCTCACCA
CCATCTCTTTCGATGAAGGCTACTCTCATCTCTTCGGCGACGGCAATCTC
ATTCGCTCCCCCGACGGCAAGAACGTTCGTCTCCTCCTCAACCGCTTCTC
CGGGTCCGGTTTTGTTTCGTCAAAATTGTACAATCACGGGTTCTTTAGCG
CGATGATCAAGTTGCCATCGGATCACACGGCTGGCTTATGTGTTGCATTC
TATACATCAAATGGAGACGTGTTCCCAAAAACACACGACGAATTAGACTT
TGAGTTTCTAGGAAACGTGGCTGGAAAACCGTGGAGGTTCCAAACAAATT
TCTATGGAAATGGGAGCACGGCACGCGGCAGGGAAGAGAGATACCGGCTT
TGGTTTGATCCCACGAAGCAATTTCATAGATATAGCATTCTTTGGACAAG
CAACAACATTATATTCTATGTGGATGAAGTACCAATAAGGGAAGTCGTGC
GCTCAACGGCAATGGGTGGAGATTTCCCATCAAAGCCAATGTCATTGTAC
ACAACAATTTGGGATGCCTCAAATTGGGCCATATCAGGTGGCAAAGCCAA
AGTTAAT
back to top