EL492618

Overview
NameEL492618
Unique NameEL492618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length203
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10794 contig Csv1_Contig10794:134..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492618 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.973e-20
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   13 VIRHAIDSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGD 192
            +I HA+D+G+TFLDTSD+YGPHTNE+LLGKA +GG RE+ ELATKFG+   DGK   HGD
Sbjct:   46 LIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKREIHGD 105
[Close]
BLAST of EL492618 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.846e-17
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   13 VIRHAIDSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVD-----GKYGYHGD 192
            +I HAI+SGIT LDTSD+YGPHTNEILLGKA KGG RER  LATKFGI + D     GK   HGD
Sbjct:   46 LIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGD 110
The following BLAST results are available for this feature:
BLAST of EL492618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IN22_MAIZE3.973e-2068.33IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
A115_TOBAC1.846e-1769.23Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
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Properties
Property NameValue
Genbank descriptionC4252 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4252, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492618 ID=EL492618; Name=EL492618; organism=Citrus sinensis; type=EST; length=203bp
GATGAGTCCTGAGTAATCCGCCATGCCATCGACAGTGGCATCACTTTTCT
TGACACTTCTGATATTTACGGCCCGCACACAAATGAAATTCTTCTGGGCA
AGGCTTTCAAAGGAGGGTTCAGGGAAAGAGCTGAATTGGCAACTAAATTT
GGAATAGGTATCGTAGATGGTAAGTACGGATATCATGGGGATCACTACGC
AGT
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