EL492617

Overview
NameEL492617
Unique NameEL492617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EL492617 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.271e-18
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 3 
Query:  225 VIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIXIXXGXYGYHGD 404
            +I HA+++G+TFLDTSD+YGPHTNE+LLGKA +GG RE+ ELATKFG+    G    HGD
Sbjct:   46 LIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKREIHGD 105
[Close]
BLAST of EL492617 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 44/65 (67.69%), Postives = 47/65 (72.31%), Query Frame = 3 
Query:  225 VIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIXI-----XXGXYGYHGD 404
            +I HAINSGIT LDTSD+YGPHTNEILLGKA KGG RER  LATKFGI +       G    HGD
Sbjct:   46 LIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGD 110
The following BLAST results are available for this feature:
BLAST of EL492617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IN22_MAIZE8.271e-1863.33IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
A115_TOBAC5.361e-1767.69Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
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Properties
Property NameValue
Genbank descriptionC4251 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4251, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492617 ID=EL492617; Name=EL492617; organism=Citrus sinensis; type=EST; length=415bp
GATGAGTCCTGAGTAATCATCTCTTCATACGGAGGATGAGAGGGAGGGCT
TCTAGGCTTCCTCGGAGCAGCGGCTTTCTTGGCTTTGGGCTCCTTAGAGG
TCTTGCCTTTGCCGGCTTTGGAGGACGGTTTGTCCTCTACCACCGGTTCA
GCGGATTCCGGTTGAGGAAGGGTCTCCGTGTCCACAACGGGATCACTACG
CAGTCAACAGATGATGAGTCCTGAGTAATCCGCCATGCCATCAACAGTGG
CATCACTTTTCTTGACACTTCTGATATTTACGGCCCGCACACAAATGAAA
TTCTTCTGGGCAAGGCTTTCAAAGGAGGGTTCAGGGAAAGAGCTGAATTG
GCAACTAAATTTGGAATANGTATCNTANATGGNAANTACGGATATCATGG
GGATCACTACNCANN
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