CK936965

Overview
NameCK936965
Unique NameCK936965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1987 contig Csv1_Contig1987:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  307 SPTSAPTNVPEKDGSF-FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSA 627
            +P+  PT+   KD S  FECNICLD+A+D VV+LCGHL+CWPC+ +W       LD     Q CPVCK+ I    +VP+YGRGG SS    K P   +   S P P +
Sbjct:    7 APSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW-------LDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSEPPPQS 107          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.238e-19
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  256 PETGYATEEDASLKQKWSPTSAPTNVPEKDG--SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            P    +TE  ++      P+ +     E  G  S FECNICLD+A+D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:    6 PSASASTENSSA----GGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 110          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  310 PTSAPTNVPEKDG--SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            P+ +     E  G  S FECNICLD+A+D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:   20 PSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 110          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  310 PTSAPTNVPEKDG--SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            P+ +     E  G  S FECNICLD+A+D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:   20 PSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 110          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  310 PTSAPTNVPEKDG--SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            P+ +     E  G  S FECNICLD+A+D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:   20 PSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 110          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  256 PETGYATEEDASLKQKWSPTSAPTNVPEKDGSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            P T  +T+  ++     S +S          + FECNICLD+A+D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:    6 PTTSASTKSSSTGGTSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 112          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.688e-18
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  346 GSFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 552
            G+ FECNICL++A++ VV++CGHLYCWPC+++WL  +        ++Q CPVCKA IS   +VPLYGRG
Sbjct:   22 GATFECNICLETAREAVVSVCGHLYCWPCLHQWLETR-------PERQECPVCKAGISREKVVPLYGRG 83          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.988e-18
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  349 SFFECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRP 615
            S FECNICLD+++D V++LCGHL+CWPC+++WL  + +       +Q CPVCKA IS   ++PLYGRG        +K       P RP
Sbjct:   37 STFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPN-------RQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRP 112          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  355 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 552
            FECNICL++A++ VV++CGHLYCWPC+++WL  +         +Q CPVCKA IS   +VPLYGRG
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETR-------PDRQECPVCKAGISREKVVPLYGRG 83          
BLAST of CK936965 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  355 FECNICLDSAQDPVVTLCGHLYCWPCIYKWLHVQTSSLDADEQQQNCPVCKANISVASLVPLYGRG 552
            FECNICL++A++ VV++CGHLYCWPC+++WL  +         +Q CPVCKA IS   +VPLYGRG
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETR-------PDRQECPVCKAGISREKVVPLYGRG 83          
The following BLAST results are available for this feature:
BLAST of CK936965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL9.870e-2147.22RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_RAT9.238e-1939.34RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_PONAB1.207e-1843.27RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_MOUSE1.207e-1843.27RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_HUMAN1.207e-1843.27RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK1.207e-1838.33RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_HUMAN2.688e-1855.07E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
RN185_DANRE5.988e-1846.07RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RNF5_RAT1.742e-1756.06E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE1.742e-1756.06E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004515_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936965 ID=CK936965; Name=CK936965; organism=Citrus sinensis; type=EST; length=870bp
GGGGAATACTTCCATTTTTAATACAAACTCAACAGCCATTACATATAGCC
GCTGTTTGTGCAGACACAAAATCCCCCAACACCACCAAACGAAACATCTA
ATAAATTTTTATACACATTTATCTTCTTCTAGCTTTTTATCTATCTTTAT
TTCAATTTTGAGTTTTTTTTTCCTTATTTTTGAATCTCTGTTTCAATCTT
GTTTCAGCCCTCTTTGCATATCAAGCACATACCCATGGAACAGAACCTCT
TTGAGCCTGAGACAGGATATGCAACTGAAGAAGATGCTTCACTCAAGCAG
AAATGGAGTCCCACCTCAGCACCTACAAATGTCCCAGAAAAAGATGGTAG
CTTCTTTGAGTGTAACATTTGCTTAGACTCAGCCCAGGACCCCGTGGTCA
CCCTTTGTGGTCACCTGTACTGCTGGCCGTGTATTTACAAGTGGCTTCAT
GTCCAAACTTCCTCTCTGGATGCAGATGAACAACAGCAGAATTGCCCGGT
CTGCAAGGCTAACATCTCTGTTGCTTCATTGGTCCCTCTCTATGGCCGTG
GAGGAATCTCTTCTGCATCCGACTCCAAGAAGCCCAATTTGGGTGAGGTC
GTACCAAGCAGGCCACATCCTTCTGCCTTGAACACTTCAGTTACTTCTAG
TTCCACCTCCACAAGGCATCAAACTCAGCAATTACATTCAGATTTTTTTC
AATCACAGGCACCAGCATTTCATAATCCACAGTACTTTCCTCACCATTAC
GGTAGTCATGCAGCTTTGGCGTCTTCTAGTCTTGGTGGTATGGCAACGAT
TAGTTTCTTTAATCCACTGATGGGAATGCTAGGAGGGATGACCTTAGAGA
GGATCTTTGGGGGTTCTACT
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