CK936955

Overview
NameCK936955
Unique NameCK936955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936955_ssr93 microsatellite CK936955_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936955_ssr559 microsatellite CK936955_ssr559:559..570. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1985 contig Csv1_Contig1985:1..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.062e-38
Identity = 98/265 (36.98%), Postives = 142/265 (53.58%), Query Frame = 2 
Query:  104 MGVDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKP----RSADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFXXXXXXXXXXXXXXXXXXXXARKA---PPIENKLPCSLEDLYKGTTKKMKISREIADISGKTMQVEE-ILTIDVKPGWKKGTKITFPEKGNEQPNVIPADLVFVIDEKPHSVFTRDGND 874
            MG DYYKILG+   A +D++KKAYRK+A+++HPDKN   + +AE KFK+I+EAY+VLSDP+KR++   Y + G +G             SF  T  G     F       +  DI                              F                     R+    PP+ ++L  SLE++Y G+TK+MKI+R   +  G+T++ E+ IL I +K GWK+GTKITFP++G+  P+ IPAD+VFV+ +KPH+ F RDG +
Sbjct:    1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN--KEPNAEEKFKEIAEAYDVLSDPKKRSL---YDQYGEEGLKTGGGSSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTN 260
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.387e-38
Identity = 98/265 (36.98%), Postives = 141/265 (53.21%), Query Frame = 2 
Query:  104 MGVDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKP----RSADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFXXXXXXXXXXXXXXXXXXXXARKA---PPIENKLPCSLEDLYKGTTKKMKISREIADISGKTMQVEE-ILTIDVKPGWKKGTKITFPEKGNEQPNVIPADLVFVIDEKPHSVFTRDGND 874
            MG DYYKILG+   A +D++KKAYRK+A+++HPDKN   + +AE KFK+I+EAY+VLSDP+KR +   Y + G +G             SF  T  G     F       +  DI                              F                     R+    PP+ ++L  SLE++Y G+TK+MKI+R   +  G+T++ E+ IL I +K GWK+GTKITFP++G+  P+ IPAD+VFV+ +KPH+ F RDG +
Sbjct:    1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN--KEPNAEEKFKEIAEAYDVLSDPKKRGL---YDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTN 260
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.387e-38
Identity = 98/265 (36.98%), Postives = 141/265 (53.21%), Query Frame = 2 
Query:  104 MGVDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKP----RSADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFXXXXXXXXXXXXXXXXXXXXARKA---PPIENKLPCSLEDLYKGTTKKMKISREIADISGKTMQVEE-ILTIDVKPGWKKGTKITFPEKGNEQPNVIPADLVFVIDEKPHSVFTRDGND 874
            MG DYYKILG+   A +D++KKAYRK+A+++HPDKN   + +AE KFK+I+EAY+VLSDP+KR +   Y + G +G             SF  T  G     F       +  DI                              F                     R+    PP+ ++L  SLE++Y G+TK+MKI+R   +  G+T++ E+ IL I +K GWK+GTKITFP++G+  P+ IPAD+VFV+ +KPH+ F RDG +
Sbjct:    1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN--KEPNAEEKFKEIAEAYDVLSDPKKRGL---YDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSARPFSGFDPDDMDVDEDDDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTN 260
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            VDYY++LGV R+A  +D+KKAYRKLA++WHPDKNP NK++AE KFKQ++EAYEVLSD +KR +YD+YG+EGL G             S F   + P  F F  R+ DD+
Sbjct:    2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNG--------GGGGGSHF---DSPFEFGFTFRNPDDV 99
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            VDYY++LGV R+A  +D+KKAYRKLA++WHPDKNP NK++AE KFKQ++EAYEVLSD +KR +YD+YG+EGL G             S F   + P  F F  R+ DD+
Sbjct:    2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNG--------GGGGGSHF---DSPFEFGFTFRNPDDV 99
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            VDYY++LGV R+A  +D+KKAYRKLA++WHPDKNP NK++AE KFKQ++EAYEVLSD +KR +YD+YG+EGL G             S F   + P  F F  R+ DD+
Sbjct:    2 VDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNG--------GGGGGSHF---DSPFEFGFTFRNPDDV 99
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.077e-26
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 331
            VDYY++LGV R+A  +D+KKAYRKLA++WHPDKNP NK++AE KFKQ++EAYEVLSD +KR +YD+YG+EGL G
Sbjct:    2 VDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNG 75
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.077e-26
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            V+YY++LGV RNA  DD+KKAYR+LA++WHPDKNP+NK +AE +FK+++EAYEVLSD +KR +YD+YG+EGL  +            S F   E P  F F  RS DD+
Sbjct:    2 VEYYEVLGVQRNASADDIKKAYRRLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGLTNR---------GGGSHFD--EAPFQFGFTFRSPDDV 99
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.543e-26
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            V+YY +LGV RNA  +D+KKAYRKLA++WHPDKNP+NK +AE +FK+++EAYEVLSD +KR +YD+YG+EGL G             S F   + P  F F  RS DD+
Sbjct:    2 VEYYDVLGVQRNASPEDIKKAYRKLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGLTG---------GGGGSHF---DNPYEFGFTFRSPDDV 98
[Close]
BLAST of CK936955 vs. ExPASy Swiss-Prot
Match: DNJB6_RAT (DnaJ homolog subfamily B member 6 OS=Rattus norvegicus GN=Dnajb6 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.543e-26
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:  110 VDYYKILGVDRNAKDDDLKKAYRKLAMRWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFKPRSADDI 436
            VDYY++LGV R+A  +D+KKAYRK A++WHPDKNP NK++AE KFKQ++EAYEVLSD +KR +YD+YG+EGL G             S F   + P  F F  R+ DD+
Sbjct:    2 VDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNG-------GGGGGGSHF---DSPFEFGFTFRNPDDV 100
The following BLAST results are available for this feature:
BLAST of CK936955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB5_MOUSE1.062e-3836.98DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNJB5_HUMAN1.387e-3836.98DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNJB5_BOVIN1.387e-3836.98DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNJB6_PONAB7.138e-2754.13DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MACFA7.138e-2754.13DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]
DNJB6_HUMAN7.138e-2754.13DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJB6_BOVIN2.077e-2668.92DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJ6A_XENLA2.077e-2653.21DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNJB6_XENTR3.543e-2653.21DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB6_RAT3.543e-2653.21DnaJ homolog subfamily B member 6 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_H10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936955 ID=CK936955; Name=CK936955; organism=Citrus sinensis; type=EST; length=879bp
GGGGACCCACACACAATTGACAGAAAGTCTGAAGCATTTTTGTAAGCAGA
ATAAGAAGAAGAGATAGTGAAAGTAAAGAAGAGAAAGATAGGAGAAGAAG
AAGATGGGAGTTGATTATTATAAGATACTGGGTGTTGATAGGAATGCTAA
AGATGATGACTTGAAGAAGGCTTATCGGAAGCTGGCCATGAGGTGGCATC
CTGATAAGAACCCCAATAACAAGAAAGATGCCGAAACTAAGTTCAAGCAA
ATCTCTGAAGCCTATGAGGTGCTGAGTGATCCTCAGAAAAGAGCGGTATA
TGATCAGTATGGAGAAGAGGGCTTAAAGGGTCAGATGCCACCACCAGATG
CTGGTGGTCCAGGTGGAGCGTCCTTCTTCTCCACTGGAGAAGGGCCTACG
TCATTTCGGTTCAAACCCCGGAGTGCTGATGACATTTTTGCTGAGTTCTT
CGGTTTTCCACACCCATTTGGTGGCATGGGTGGTGGCGGTGGAGGGATGA
GAGGTTCAAGGTTTGCAGGCGGGTTATTTGGGGATGATATGTTTGGGCCA
TTCGGTGAAGGAGGAGGAGGATCAATGGGTGGTGGTGGGGCTAGAAAAGC
GCCTCCGATAGAGAATAAGTTGCCTTGTAGCCTTGAGGATCTCTATAAGG
GGACCACTAAGAAGATGAAGATCTCTAGAGAGATAGCTGATATAAGTGGC
AAGACTATGCAGGTAGAGGAAATTCTAACTATTGATGTGAAGCCCGGATG
GAAGAAGGGTACAAAGATCACCTTCCCTGAGAAAGGAAATGAGCAGCCAA
ATGTTATACCTGCTGATCTTGTATTCGTTATTGATGAGAAGCCTCACAGT
GTATTTACTCGGGATGGAAATGATTGGAT
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