CK936954

Overview
NameCK936954
Unique NameCK936954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 3
Query:    9 DLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 347
            D+ VVPEST SDI++ H R  K TID  SGPP Q+  QLTPM+REARVLRY            IRYASRKAYAE RPRIKGRFAKR + E E +++FS +LM++ GYGIVPSF
Sbjct:  235 DISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVPSF 347          
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 66/113 (58.41%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    9 DLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 347
            DLGVVPEST SD ++S+ R PK   D    PP QM   L+P DREARVLRY            IRYASRKAYAE RPRIKGRFAK+ D + E +Q FS  +  D GYGIVPSF
Sbjct:  246 DLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQM---LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITFDTGYGIVPSF 355          
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 64/115 (55.65%), Postives = 74/115 (64.35%), Query Frame = 3
Query:    9 DLGVVPESTMSDISISHSRPPKGTIDLFSGPPIQM--PPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 347
            + GVVPEST    + SH R PKGT++    P  QM    QL+PMDREARVLRY            IRYASRKAYAE RPR+ GRFAKR + E E +Q F+  LM + GYGIVPSF
Sbjct:  261 ETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAE-EQGFNTMLMYNTGYGIVPSF 373          
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 3
Query:    9 DLGVVPES-TMSDISISHSRPPKGTIDLFSGPPIQMPPQLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 347
            ++GVVP+  +++D+S  +  P     D    P  Q    LT  +REARV+RY            IRYASRKAYAE RPRIKGRFAKRTD     D +    + +  G+G+VP+F
Sbjct:  255 EVGVVPDGGSVADVSYPYGGPATSGAD----PGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFS--GFGLVPTF 362          
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  120 QLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPG---YGIVPSF 347
            Q + MDREARVLRY            IRYASRKAYAE+RPRIKGRFAKRT  E E D +F + +        YG+VP+F
Sbjct:  279 QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT--ETENDDIFLSHVYASAAHAQYGVVPTF 355          
BLAST of CK936954 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  120 QLTPMDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDAEVEVDQMFSATLMTDPGYGIVPSF 347
            QL+P +REARVLRY            IRYASRKAYAE RPRIKGRFAKRTD+     +     +    G+G+VPSF
Sbjct:  223 QLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSR----ENDGGDVGVYGGFGVVPSF 294          
The following BLAST results are available for this feature:
BLAST of CK936954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL2_ARATH6.003e-3361.95Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL1_ARATH2.886e-2758.41Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH1.936e-2355.65Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL4_ARATH4.322e-1542.98Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH4.046e-1354.43Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL3_ARATH6.901e-1353.95Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004515_H09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936954 ID=CK936954; Name=CK936954; organism=Citrus sinensis; type=EST; length=608bp
GGGCTACTGATCTCGGAGTGGTACCGGAATCAACCATGAGTGACATATCG
ATTTCACACTCGAGGCCACCGAAAGGGACCATTGACCTCTTCTCAGGACC
TCCAATTCAAATGCCACCCCAGCTTACTCCCATGGACAGGGAGGCCAGAG
TCTTGAGATACAGGGAAAAAAAGAAGACAAGAAAATTCGAGAAGACAATC
CGGTATGCCTCAAGGAAGGCCTATGCGGAAACTAGACCACGTATCAAGGG
CAGGTTCGCGAAGAGAACCGATGCTGAAGTTGAAGTTGATCAAATGTTCT
CCGCAACATTGATGACTGATCCTGGATATGGCATTGTTCCTTCATTCTAA
ATCCATCGATGAGTCGAAGAATAGCTCTCAAGACTAGAGGTCTACTGTTT
ATTACTAAAGTACTACTACTTGTATTGTAGCTCTCTTAATATAATTATCT
GAATCAATGAGATATTTCTTCCGTATAGTAATTTTCTTGTCTATTCATGC
AACCATGACACTGCTATGTTGTAAATGTATGTATATTCATAATTTTTGGA
ATTAATTTCATCACGATTATTGCTTTCCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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