CK936950

Overview
NameCK936950
Unique NameCK936950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_PANGI (ATP synthase subunit a, chloroplastic OS=Panax ginseng GN=atpI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 37/56 (66.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G+ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GDILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_GUIAB (ATP synthase subunit a, chloroplastic OS=Guizotia abyssinica GN=atpI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 37/56 (66.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G+ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GKILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_WHEAT (ATP synthase subunit a, chloroplastic OS=Triticum aestivum GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPLVIPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_VITVI (ATP synthase subunit a, chloroplastic OS=Vitis vinifera GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPSIVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_TRACE (ATP synthase subunit a, chloroplastic OS=Trachelium caeruleum GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_STAPU (ATP synthase subunit a, chloroplastic OS=Staurastrum punctulatum GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  193 GNILADELVVAVLVSLVPLVVPIPMMFLGLFTSGIQALIFATLAAAYIGESMEGHH 248          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_SOYBN (ATP synthase subunit a, chloroplastic OS=Glycine max GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_SORBI (ATP synthase subunit a, chloroplastic OS=Sorghum bicolor GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_SACOF (ATP synthase subunit a, chloroplastic OS=Saccharum officinarum GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
BLAST of CK936950 vs. ExPASy Swiss-Prot
Match: ATPI_SACHY (ATP synthase subunit a, chloroplastic OS=Saccharum hybrid GN=atpI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GEILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 168
            G ILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:  192 GNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247          
The following BLAST results are available for this feature:
BLAST of CK936950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ATPI_PANGI1.106e-1166.07ATP synthase subunit a, chloroplastic OS=Panax gin... [more]
ATPI_GUIAB1.444e-1166.07ATP synthase subunit a, chloroplastic OS=Guizotia ... [more]
ATPI_WHEAT1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Triticum ... [more]
ATPI_VITVI1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Vitis vin... [more]
ATPI_TRACE1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Tracheliu... [more]
ATPI_STAPU1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Staurastr... [more]
ATPI_SOYBN1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Glycine m... [more]
ATPI_SORBI1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Sorghum b... [more]
ATPI_SACOF1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Saccharum... [more]
ATPI_SACHY1.886e-1166.07ATP synthase subunit a, chloroplastic OS=Saccharum... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_A11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936950 ID=CK936950; Name=CK936950; organism=Citrus sinensis; type=EST; length=561bp
GGGGAAATATTAGCCGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGT
ACCTTTAGTGGTTCCTATACCCGTCATGTTCCTTGGATTATTTACAAGCG
GTATTCAAGCTCTTATTTTTGCAACTTTAGCTGCGGCTTATATAGGCGAA
TCTATGGAGGGACATCATTGACTCGTTTTCGAAATAGTCTTTTTTTGTAG
CTTAGAACAAAGGCAATGGATGCGTAACTCAAGATAATCTACTTATACTT
CTACTTAGGAAAAATACATATCCAAACATAAATCTACAAATACCGCATAT
ACGATCAAGAGTCGTAGAAAAAAAATTACGATATTGGGGAATTGTAGGAA
AGAGATCTAAAGGATCTTTTTCCTCAAATTCCTCTTTGGCCTTATTATAT
CATCCCCCCCTCTCCCCGCCAATTAATATTTTCTTTATATTGTTTTGTTC
ATTTTTGTTCATTCAATTCGAATAGCAAATACCAAGAGTGATAAGTTGAA
TAAAAATTCTTATAGTATCACAGGCGGGTGATTAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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