CK936932

Overview
NameCK936932
Unique NameCK936932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936932_ssr511 microsatellite CK936932_ssr511:511..522. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1984 contig Csv1_Contig1984:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.488e-64
Identity = 125/216 (57.87%), Postives = 162/216 (75.00%), Query Frame = 1
Query:  166 LTWQDLWVTVPDG*KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            LTWQDL V V  G  +  +++L+GLTGYA PG L A+MGPSG GKST+LDALA RL +N   +G +L+NGRK  L++GT+AYVTQDD LI TLTV E ++YSA+++LPD M + +K+   E TI EMGLQD  +T IG W  +G+SGG+KRRVSI +E+L RP+LLFLDEPTSGLDSA++++V   +  L +       RT+I SIHQPSSEVF+L
Sbjct:   50 LTWQDLTVMVTMGDGE-TQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANAFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR-----DGRTVIASIHQPSSEVFEL 259          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.784e-61
Identity = 122/243 (50.21%), Postives = 166/243 (68.31%), Query Frame = 1
Query:   85 EVVESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDG*KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            E+  SSS  +     + ++     G +L W+DL V +P+      R +LQ L GYA PG ++AIMGPSG GKSTLLD+LAGRL  N    G +L+NG+K  L YG  AYVTQ+D L+ TLTV E + YSA L+LP  M+K +  +  E TI E+GLQD  +  IG W A+G+SGG+++RVSI +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD     RT+I+S+HQPSSEVF L
Sbjct:    2 ELEGSSSGRRQLPSKLEMSR----GAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD----GRTVISSVHQPSSEVFAL 235          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.556e-60
Identity = 120/241 (49.79%), Postives = 166/241 (68.88%), Query Frame = 1
Query:   91 VESSSNNKTATHSINVNEDDGDGVFLTWQDLWVTVPDG*KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            +ES+SN +       +    G G +L W+DL V +P+      R +L GL G+A PG ++AIMGPSG GKSTLLD+LAGRL  N    G +L+NG+K  L YG  AYVTQ+D L+ TLTV E + YSA L+L   +TK +  +  E TI E+GLQD  +  IG W ++G+SGG+++RVS+ +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD   G RT+++SIHQPSSEVF L
Sbjct:    3 LESTSNGRRPPPPAEI----GRGAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD---GGRTVVSSIHQPSSEVFAL 235          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.645e-57
Identity = 106/218 (48.62%), Postives = 156/218 (71.56%), Query Frame = 1
Query:  160 VFLTWQDLWVTVPDG*KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            +++ W+DL V +P+  +   + +L G+ G   P  +LAIMGPSG GKSTLLDALAGRL  N   +G++L+NG+KR L +G +AYVTQ+D L+ TLTV E++ YSA L+LP  +T+ +  +  E TI +MGL++  +  IG W  +G+SGG+K+R+SI +E+LT+P LLFLDEPTSGLDSA++++V+  +     R+     +T+++SIHQPS EVF L
Sbjct:    8 MYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQIL-----RNIASSGKTVVSSIHQPSGEVFAL 220          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.731e-41
Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:  220 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRL-GSNTRQAGEILIN-GRKRALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            R+IL G+TG   PGE +A++GPSG GKSTLL+A+AGRL GSN    G+ILIN G+        + +V QDD L   LTV E + + A L+LP ++T+  K   AE  I E+GL    NT +G    +G+SGG+++RVSI  E+L  P LL LDEPTSGLD+ A+  ++  +A L    HG G +T++TSIHQPSS VFQ+
Sbjct:   81 RTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNL--TGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGL---AHGKG-KTVVTSIHQPSSRVFQM 274          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.249e-40
Identity = 89/203 (43.84%), Postives = 130/203 (64.04%), Query Frame = 1
Query:  208 KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            K   ++IL G+TG   PGE LA++GPSG GK+TLL AL GRL      +G+++ NG+         + +V QDD L   LTV E ++++A L+LP ++T+ +K E  +  I E+GL    N+ IGG   +G+SGG+K+RVSI  EML  P LL LDEPTSGLDS  ++ +++ I +L       G RT++T+IHQPSS ++ +
Sbjct:   75 KSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTF--SGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRL-----ASGGRTVVTTIHQPSSRIYHM 270          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 91/198 (45.96%), Postives = 134/198 (67.68%), Query Frame = 1
Query:  208 KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNT-RQAGEILINGRKRALAYG-TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPS 795
            K   R+IL+GLTG  +PGE+LA++GPSG GK++LL AL GR+G    +  G I  N +  + A   T+ +VTQDDAL   LTV+E + ++A L+LP++  K +K ++A+  + E+GL    +T IGG   +G+SGG+++RVSI  E+L  P LLFLDEPTSGLDS  +  ++S + +L +     G RT++T+IHQPS
Sbjct:   60 KTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELAR-----GGRTVVTTIHQPS 252          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.545e-40
Identity = 89/202 (44.06%), Postives = 133/202 (65.84%), Query Frame = 1
Query:  211 KGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRK-RALAYGTSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            K NR +L+ ++G  +PGELLA++GPSG GK+TL+ ALAGRL    + +G +  NG    +     + +VTQDD L   LTV E + Y+A L+LP  +T+ +K E+ EM + ++GL    N+ IGG   +G+SGG+++RVSI  EML  P LL LDEPTSGLDS  +  +++ +  L +     G RT++T+IHQPSS ++++
Sbjct:   94 KPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQG--KLSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLAR-----GGRTVVTTIHQPSSRLYRM 288          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.904e-39
Identity = 103/267 (38.58%), Postives = 156/267 (58.43%), Query Frame = 1
Query:   34 MSSLDHSIPVPAISRAFEVVESSSNNKTATHSINVNEDDGDGVFLTWQDLW--VTVPDG*----KKGNRSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYG-TSAYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQL 813
            MSS  + + +P   R    +  SS+N+  T +         G  L++ D+   V V  G     K   + IL  + G  +PG L AI+GP+G GKS+LLD LA R   +   +G++LING  R   +   S YV QDD ++ TLTV E + +SA L+LP TMT  +K ER  M I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+L
Sbjct:    1 MSSNSYQVSIPMSKRNTNGLPGSSSNELKTSA--------GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHGL-SGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKL 252          
BLAST of CK936932 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.242e-39
Identity = 90/197 (45.69%), Postives = 127/197 (64.47%), Query Frame = 1
Query:  220 RSILQGLTGYARPGELLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKRALAYGTS-AYVTQDDALITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVF 807
            + IL G++G   PGE+LA+MGPSG GK+TLL  LAGR+ S +   G +  N +  +    +   +VTQDD L   LTV E + Y+A+L+LP T+T+ QKK+RA   I+E+GL+   +T IGG   +G+SGG+++RVSI  E++  P LL LDEPTSGLDS  +   +     L   D     +T+IT+IHQPSS +F
Sbjct:  177 KEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRI-SQSSTGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTI-----LMLHDIAEAGKTVITTIHQPSSRLF 367          
The following BLAST results are available for this feature:
BLAST of CK936932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB11G_ARATH8.488e-6457.87ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH8.784e-6150.21ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH2.556e-6049.79ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH2.645e-5748.62ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB25G_ARATH7.731e-4149.00ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB14G_ARATH2.249e-4043.84ABC transporter G family member 14 OS=Arabidopsis ... [more]
AB9G_ARATH6.545e-4045.96ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB21G_ARATH6.545e-4044.06ABC transporter G family member 21 OS=Arabidopsis ... [more]
ABCG2_PIG1.904e-3938.58ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
AB22G_ARATH4.242e-3945.69ABC transporter G family member 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_D06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936932 ID=CK936932; Name=CK936932; organism=Citrus sinensis; type=EST; length=815bp
GGGAATATAATTCACTCTAACACTTGTTTCAGCATGTCTTCTCTTGATCA
CTCTATTCCTGTGCCAGCAATCAGTAGAGCATTTGAAGTAGTGGAGAGCA
GTAGTAATAATAAAACCGCAACTCATAGTATTAATGTTAATGAAGATGAT
GGAGATGGTGTTTTCTTAACTTGGCAAGATCTGTGGGTTACGGTTCCCGA
TGGTTAGAAAAAAGGCAACAGATCAATCCTTCAAGGTCTTACTGGCTACG
CAAGACCTGGGGAGCTTTTGGCTATTATGGGTCCTTCTGGTTGTGGAAAA
TCTACTCTTCTTGATGCTTTAGCTGGAAGACTAGGATCGAACACAAGGCA
AGCAGGAGAAATTCTAATTAATGGGCGCAAACGGGCACTGGCTTATGGAA
CCTCGGCATATGTGACACAAGATGACGCTTTGATCACTACACTGACGGTT
AGTGAAGCAGTGTACTACTCAGCTCAGCTGCAATTGCCGGACACGATGAC
CAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAAAAGAAATGGGGC
TCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGAGCTAAAGGCCTT
AGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGAAATGTTGACTCG
ACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGACTTGATAGTGCTG
CTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGATCAAAGAGATCAT
GGAGTGGGATCAAGAACAATAATAACATCAATCCATCAACCTAGCAGCGA
AGTTTTTCAGCTTTT
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