CK936920

Overview
NameCK936920
Unique NameCK936920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1982 contig Csv1_Contig1982:1..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.144e-81
Identity = 137/177 (77.40%), Postives = 156/177 (88.14%), Query Frame = 2
Query:   62 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 592
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP G KK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.662e-80
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 586
            MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP G +KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.930e-80
Identity = 142/182 (78.02%), Postives = 160/182 (87.91%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 592
            MA SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.118e-78
Identity = 134/176 (76.14%), Postives = 155/176 (88.07%), Query Frame = 2
Query:   56 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 583
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.461e-78
Identity = 141/183 (77.05%), Postives = 160/183 (87.43%), Query Frame = 2
Query:   47 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 589
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.250e-78
Identity = 141/183 (77.05%), Postives = 160/183 (87.43%), Query Frame = 2
Query:   47 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 589
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.237e-77
Identity = 136/181 (75.14%), Postives = 154/181 (85.08%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 589
            MASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.615e-77
Identity = 135/181 (74.59%), Postives = 153/181 (84.53%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 589
            MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.598e-77
Identity = 136/182 (74.73%), Postives = 160/182 (87.91%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 589
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP   KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CK936920 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 6.137e-77
Identity = 137/180 (76.11%), Postives = 154/180 (85.56%), Query Frame = 2
Query:   47 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGSKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 586
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of CK936920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_LACSA3.144e-8177.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR2.662e-8078.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE5.930e-8078.02Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.118e-7876.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.461e-7877.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP4.250e-7877.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR1.237e-7775.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.615e-7774.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU3.598e-7774.73Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH6.137e-7776.11Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_E03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936920 ID=CK936920; Name=CK936920; organism=Citrus sinensis; type=EST; length=776bp
GGGGAAGTAAAATAACTTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGG
CTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGC
CTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTC
TGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAA
GCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTCG
AAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTATCCGATGAAGCTTT
GCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGG
AATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCA
GGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGG
GTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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