CK936906

Overview
NameCK936906
Unique NameCK936906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936906_ssr15 microsatellite CK936906_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11062 contig Csv1_Contig11062:313..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936906 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:  331 KIGAKVKVKVPLKVYHVPRVPEHDLSGMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEG--RPVKFFAHLKEDEFDYLD 564
            KIG +V+V  PL+VYHV + P+ D+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  +PV+FFAHL+EDEF+++D
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFVD 96
[Close]
BLAST of CK936906 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:  223 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGAKVKVKVPLKVYHVPRVPEHDLS-GMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEGR-PVKFFAHLKEDEFDYL 561
            I CEVA+KS++ST                    +  K+G KVKVK PLKVYHVP++PE +L+  M GV+KQYVG WKGK IS N P+KV +  ++  R  VK   HLKE+EF+ +
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172
The following BLAST results are available for this feature:
BLAST of CK936906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE1.129e-2258.75Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL1.526e-1946.96Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004516_E07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936906 ID=CK936906; Name=CK936906; organism=Citrus sinensis; type=EST; length=772bp
GGGGGGGTAATATCATTATTATTATTATATGATTATTTTGTGAGAATTAG
CAGACGAGTGAAAAGATAGATACACAGAGAAATCATGACTAGTACAAGTT
TTGCTTTGTCCTCGGCTACTTCTTCGCTGATAAATCGACGGCCACTTACG
AATGCGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGACAA
TGTTAATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTGTAAAATCCA
ACAATTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCTTCATCAGCA
TCAGCGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGCGAAGGTTAA
GGTGAAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTCCGGAGCATG
ATCTGTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGCGTTTGGAAA
GGAAAGAAAATCTCAGCCAATATGCCTTACAAGGTAGCGTTTGTTACTGA
AATTGAAGGCCGTCCTGTCAAGTTCTTTGCACATCTCAAGGAAGACGAGT
TTGATTACCTTGATTAATATTTTTAAATTTTTATTATTTTGAACATGTTA
TTCCTTCTCTTTCCTGTCTCCATCCTCTACAAATAATATTTTTAGTCTTT
GTATGTAACTCTTCACATGAGATTATGCTTCTTAGTGTTTTTATTGTTAT
ACTTTCTCTTGCTATATAATCAATCATTTCTATATTTCTTTACAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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