CK936903

Overview
NameCK936903
Unique NameCK936903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936903_ssr147 microsatellite CK936903_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12816 contig Csv1_Contig12816:51..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 8.230e-92
Identity = 174/270 (64.44%), Postives = 205/270 (75.93%), Query Frame = 3
Query:   66 MADEHKHEEPAG-----------ESVMEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 830
            MADEHKHEE +            ES+MEK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.241e-89
Identity = 173/274 (63.14%), Postives = 203/274 (74.09%), Query Frame = 3
Query:   66 MADEHKHEE------PA-----GESVMEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 830
            MA+EHKH+E      PA      ES+M+KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.112e-88
Identity = 167/246 (67.89%), Postives = 192/246 (78.05%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 803
            MA+EHKHEE    S+MEKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.453e-88
Identity = 166/260 (63.85%), Postives = 192/260 (73.85%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL----SKIPRSLKDKKK 830
            M ++HKHEE    S++EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR   +KKK
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.349e-85
Identity = 157/256 (61.33%), Postives = 195/256 (76.17%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDKKK 830
            MA+E +   P  ES+MEKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD KVLSKIP  SLK K K
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.008e-81
Identity = 155/254 (61.02%), Postives = 188/254 (74.02%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDK 824
            MA+E +      ES+MEKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EK   E+KK Y VFD KVLSK+P  SLK K
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.582e-61
Identity = 110/200 (55.00%), Postives = 148/200 (74.00%), Query Frame = 3
Query:  207 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 806
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED +D  +EKA  E+KK Y VF+AK LSKIP
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.811e-54
Identity = 100/202 (49.50%), Postives = 137/202 (67.82%), Query Frame = 3
Query:  225 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 830
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D   LS+IP      KK
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKK 245          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.746e-44
Identity = 86/205 (41.95%), Postives = 130/205 (63.41%), Query Frame = 3
Query:  216 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR-SLKDKK 827
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+ + K   ++KK Y   D  VLSKIPR ++K+KK
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223          
BLAST of CK936903 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.519e-32
Identity = 72/197 (36.55%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  237 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 812
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW LF+++EY  +T +C  L++ + +  +WS   +S  I   PP I ++ I E       S  RF   +IN     L +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +   + K+  ++KK    F++KV++KIP++
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207          
The following BLAST results are available for this feature:
BLAST of CK936903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLB_ARATH8.230e-9264.44Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH2.241e-8963.14Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.112e-8867.89Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.453e-8863.85Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH3.349e-8561.33Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.008e-8161.02Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.582e-6155.00Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH6.811e-5449.50Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH3.746e-4441.95Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH2.519e-3236.55Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_G02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936903 ID=CK936903; Name=CK936903; organism=Citrus sinensis; type=EST; length=877bp
GCGGGGATTTCTCAAAGTTAAAAAGGTTTNNNAACACCGAGTGAGGGATT
TGTACAGAGAGCGAGATGGCTGACGAGCATAAACACGAGGAACCAGCCGG
TGAATCGGTGATGGAGAAGATAACGGAGAAGATCCACGGCCACGATTCGT
CGTCGTCGTCATCGTCATCTGACACCGATGATGATAAGAAGTCATCTACA
TCCTCCCTCAAGACCAAAGTATTTCGTCTCTTCGGAAGAGAAAAGCCTGT
TCACAAGGTTCTTGGTGGCGGAAAACCTGCGGATGTTTTCTTATGGAGGA
ACAAGAAGATTTCAGCAGGAGTACTTGGTGGGGCTACTGCAATATGGGTT
CTGTTTCAATTGCTTGAGTACCACCTTCTAACTCTTGTCTGTCACTGCCT
GATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCA
TTAACAAGTCTCCACCACGCATTCCGGAAGTATATATCCCTGAGGAACCA
GTTTTACAGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCAC
TCTTCTGAGGGAAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGG
TGATTGCTGGCTTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTC
TTGACCTTGTTCTACATAGTTTTTGTACTGCTTCACACTGTGCCTGTGAT
ATATGAGAAGTATGAGGATCGGGTGGATTCATTTTCTGAGAAGGCATGGG
CTGAGATCAAGAAGCAGTATGCAGTCTTTGATGCCAAGGTCTTAAGTAAG
ATACCGAGGTCATTGAAGGACAAGAAGAAGGCTTAGAATGGTGGTATAAA
TTTGTGGTCTTTGCTAGGTNNNNNCAC
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