CK936888

Overview
NameCK936888
Unique NameCK936888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSK++TAEKGGQFSLHILKHSTIVAKPRSF
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKLDTAEKGGQFSLHILKHSTIVAKPRSF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSKI+T+EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSKI+T+EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSKI+TAEKGGQFSLHILKHSTIV KPRSF
Sbjct:  431 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVCKPRSF 504
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSKI+T+EKGGQFSLHILKHSTIVAKPR+F
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRAF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQSKI+T EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTDEKGGQFSLHILKHSTIVAKPRSF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQS+I+T+EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  433 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTIVAKPRSF 506
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQS+I+T+EKGGQFSLHILKHST+VAKPRSF
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTVVAKPRSF 505
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.373e-25
Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQN ELLPPPGQSKI+T+EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  433 GNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 506
[Close]
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRSF 409
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPG+SKI+T+EKGGQFSLHILKHSTIV KPR+F
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGKSKIDTSEKGGQFSLHILKHSTIVLKPRTF 505
The following BLAST results are available for this feature:
BLAST of CK936888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_GLYEC3.984e-2677.03Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_POPTM5.203e-2677.03Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_POPKI5.203e-2677.03Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_CICAR6.796e-2677.03Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
TCMO_PEA1.159e-2575.68Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_HELTU1.159e-2577.03Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_SOYBN1.514e-2575.68Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_PHAAU1.977e-2574.32Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_MEDSA3.373e-2575.68Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_CATRO1.282e-2472.97Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004516_G05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936888 ID=CK936888; Name=CK936888; organism=Citrus sinensis; type=EST; length=595bp
GGGGACTGGAGTCCCTGTATTCATTACGTTAATCGTAAAGATGGATCTCC
TCTTGCTGGAAAAGACGCCTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCC
ATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCC
CCTCCCCGTCCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTCC
GTTACCTTCCTTTCGGTGTTGGGAGAAGAAGCTGCCCTGGAATTATCCTT
GCTTTGCCAATTCTTGGTATCACTATTGGGCGTTTGGTACAGAACTTTGA
GCTCTTGCCTCCTCCAGGTCAATCTAAGATTAACACTGCAGAGAAAGGTG
GGCAGTTCAGTTTGCACATTTTGAAGCACTCGACCATTGTTGCCAAGCCT
AGATCATTCTAGTTTCACAATTCCATTTGGTTGTAATGTTAAGTCTGTTT
CAAAGTGGTTGAATGGTTTCTTCAATGTCGGATCAAATCAAGTGGCAGTT
GGCTAGTTATATAATACTTGTGTAAATTTGTGAGCTTAAATCTTCAAATC
TTCATTTAAGATTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top