CX675205

Overview
NameCX675205
Unique NameCX675205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11826 contig Csv1_Contig11826:667..1329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A +  I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  205 ADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A +  I A+PTV +T+ H+ S   CPVC+D + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  208 ADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = -2
Query:  456 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 647
            I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  208 IQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A +  I A+PTV +T+ H+ S   CPVC++ + LG   RQ+PCNH++H  CIVPWL QH+SCPVCR+ L
Sbjct:  207 ADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A    I A+PT++IT+ H+ S   CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  204 ADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = -2
Query:  456 IDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 647
            I A+PT++IT+ H+     CPVC++ + +G   RQ+PCNH++H+DCI+PWL QH++CPVCR+ L
Sbjct:  209 IQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A +  I ++PTV +TQ  + +   CPVC++ + +  + RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  205 ADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = -2
Query:  456 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 662
            A +  I ++PTV +TQ  +     CPVC++ + +  E RQ+PCNH +HS CIVPWL  H++CPVCR+ L
Sbjct:  204 ADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = -2
Query:  453 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 662
            AA+  ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   55 AAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of CX675205 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = -2
Query:  453 AARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 662
            A++  ++++P V +T     +   CPVC  +FE G   RQ+PC H++HS CI+PWL + NSCP+CR ELP
Sbjct:   55 ASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
The following BLAST results are available for this feature:
BLAST of CX675205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RN126_HUMAN8.876e-2055.07RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN1.159e-1955.07RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN126_XENTR1.977e-1953.13RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_MOUSE1.977e-1953.62RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA4.405e-1950.72RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA9.813e-1951.56RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN115_MOUSE2.672e-1646.38RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RN115_HUMAN2.672e-1647.83RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_XENTR7.776e-1647.14E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA2.955e-1545.71E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60E06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60E06-I12-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675205 ID=CX675205; Name=CX675205; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTAACACAAAAAAGGGAAGTATAATTTACATAAAAG
ACGGTAGAACACAAACGACACCCAATTACTCTTTTAAGAGACACACTGGA
CTTGTAGATTTCAATGTCCCAACCAATTCCAAAGTTTTAAGAAGTCCTTT
TTGGTATCAATTGAGACACCGACTTATCATGAACAATTTATTAACACACT
GACTTCTAGTCTTTAATCAAATGGCCATCCGGAATACCCCATGTGAGGGT
TATTCTCGTGCATTGCTGGTGAACTGCTTTCAGTTGTTCCATTGTGATTA
GAGCTTGAATTCGAAGATCGGAACGGCCAGAAACCAGAGAACAAATTCCG
TCTTCCTTGATTCTCCCTTCCGTTGCCATTACTACCAAAAGTGGTGCTTC
GACTTTGACCACTTGAGCTTTGATGAATACGACTGCTACTTGACCCTTGC
AGTGGTAATTCTTGGCGACATACAGGACATGAGTTGTGCTGCACTAGCCA
TGGCACAATACAATCTGAGTGGTATATATGGTTACATGGCATTTGTCTAG
CTTCAGACCCCAGCTCGAATTTATCTTGGCAAACTGGACAGTGCGAATCA
GAACGGAGATGCCTCTGTGTGATCCTAACGGTGGGCATAGCATCAATTGC
AGATCTCGCCGCT
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