CK936849 | Citrus Genome Database

Overview


Name	CK936849
Unique Name	CK936849
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	396

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OLIPU (Photosystem I reaction center subunit IX OS=Olimarabidopsis pumila GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_NASOF (Photosystem I reaction center subunit IX OS=Nasturtium officinale GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_NANDO (Photosystem I reaction center subunit IX OS=Nandina domestica GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LOBMA (Photosystem I reaction center subunit IX OS=Lobularia maritima GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_DRANE (Photosystem I reaction center subunit IX OS=Draba nemorosa GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CRUWA (Photosystem I reaction center subunit IX OS=Crucihimalaya wallichii GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CITSI (Photosystem I reaction center subunit IX OS=Citrus sinensis GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CARPA (Photosystem I reaction center subunit IX OS=Carica papaya GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_BUXMI (Photosystem I reaction center subunit IX OS=Buxus microphylla GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

[Close]

BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ARATH (Photosystem I reaction center subunit IX OS=Arabidopsis thaliana GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44

The following BLAST results are available for this feature:

BLAST of CK936849 vs. ExPASy Swiss-Prot

BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
PSAJ_OLIPU	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Olimar...	[more]
PSAJ_NASOF	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Nastur...	[more]
PSAJ_NANDO	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Nandin...	[more]
PSAJ_LOBMA	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Lobula...	[more]
PSAJ_DRANE	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Draba ...	[more]
PSAJ_CRUWA	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Crucih...	[more]
PSAJ_CITSI	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Citrus...	[more]
PSAJ_CARPA	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Carica...	[more]
PSAJ_BUXMI	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Buxus ...	[more]
PSAJ_ARATH	1.651e-18	100.00	Photosystem I reaction center subunit IX OS=Arabid...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA