CK936848

Overview
NameCK936848
Unique NameCK936848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936848_ssr229 microsatellite CK936848_ssr229:229..240. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936848_ssr506 microsatellite CK936848_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK936848 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 76/172 (44.19%), Postives = 105/172 (61.05%), Query Frame = 2 
Query:  317 MEEMSPAVSLTLSFS-NSMTDNSGHANHVEITRLKFVTDRANLLSDSNKLASEESSPGAKGXXXXXXXXXXRVILSAAEGNGGQGVGLLKIFPE--SGSSIISSDAVILENEDDEILSVIEDPNGIINEGLVVLDPGKSLTNS---VEIDSGRILAKAIILGESSVEQVPTA 814
            MEEM+PAV++TLS + N+M ++S     VEIT+LK VTD A+LLSDS      E+     G             +S  E  G Q   LLK   +  SGSS +         ++D++LSV+ED + +I+EGL+V+D G  L+ S   +EID+GR+LA AII+GESS+EQVPTA
Sbjct:    1 MEEMTPAVAMTLSLAANTMCESSP----VEITQLKNVTDAADLLSDS------ENQSFCNGGTECTMED-----VSELEEVGEQD--LLKTLSDTRSGSSNVF--------DEDDVLSVVEDNSAVISEGLLVVDAGSELSLSNTAMEIDNGRVLATAIIVGESSIEQVPTA 147
The following BLAST results are available for this feature:
BLAST of CK936848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
P2C16_ARATH3.377e-2044.19Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_B12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936848 ID=CK936848; Name=CK936848; organism=Citrus sinensis; type=EST; length=815bp
GGGGTTGCAAGCCTCTAATCCAAGGCAGAGCAAAAAAGAAGCTGAAGAAA
AAAAAATCTGGCCTTAAGAGGGTTTGCTGGAGACCTTGTTAGCAACACTC
AAGAGTCTCTGCAGTTTCAACTGTGTATGTAGAGGTTTTAAGCAGATTGG
TGGATCATTGAGGGTTATGATGATGGAAGAGGAGTGGTTAAAAGCTGCTG
GCTTTATTTCAAGTTCGTTGCTGGAAGGAGAAGAAGAAGATGAAAATTGG
TAGATTAATTGTGTGAAATTGGAGAGATTCAGTGGTTATTGTTTTTAGCT
TTCAGTGAGGGGATTGATGGAAGAGATGTCTCCAGCTGTTTCGCTGACGC
TTAGTTTTAGTAATTCTATGACTGATAATTCAGGACATGCAAACCATGTG
GAAATCACACGGCTTAAGTTTGTGACAGATAGAGCAAACTTGTTGTCGGA
TTCTAATAAGTTGGCATCGGAAGAATCTAGCCCCGGTGCCAAAGGAAATA
TTAGCAATAATAATAATGAAGTTAACCGGGTGATTTTGTCGGCAGCAGAA
GGAAATGGTGGTCAAGGAGTTGGTTTGCTGAAAATCTTTCCTGAGAGTGG
TAGCAGTATTATTTCCAGTGATGCTGTGATTCTGGAAAATGAGGACGATG
AAATTCTTTCTGTTATTGAGGACCCAAACGGGATTATCAATGAGGGTTTG
GTAGTTTTGGATCCAGGGAAAAGCTTGACAAATTCTGTGGAAATTGATAG
TGGTCGAATTCTTGCTAAGGCTATTATTTTAGGAGAGTCAAGTGTTGAGC
AGGTGCCTACAGCTG
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