CK936843

Overview
NameCK936843
Unique NameCK936843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936843_ssr275 microsatellite CK936843_ssr275:275..286. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12427 contig Csv1_Contig12427:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936843 vs. ExPASy Swiss-Prot
Match: ANTA_GENTR (Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 58/211 (27.49%), Postives = 96/211 (45.50%), Query Frame = 3 
Query:  147 TLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVIXXXXXXXXXXXXXXXXXXXGHIMWPADSAK-PAIYYFPDQNDGVSFTVAESDADFSHLSGNN--GNREAVEFHHLTPQLSITDDKAEV---VAIQITLFPKQGFCISVLTHHAVIDGISKTMFERSWAYFCKXXXXXXXXXXXXXXXXXPTKLIPCFDRTLIKDRKGLDVVYAN 761
            +LP+T+FD  WL     + + FY          ++VI                   G+++ P  S + P   Y  D+ D ++  VAESD DF +L G+    + +     ++ P++  T    +V   VA+Q+T+FP +G  +++  HH++ D  S  MF  +WAY  K                    L+P FDR++IKD  GL+  + N
Sbjct:   27 SLPVTFFDIPWLHLNKMQSLLFYDFPYPRTHFLDTVIPNLKASLSLTLKHYVPLS-GNLLMPIKSGEMPKFQYSRDEGDSITLIVAESDQDFDYLKGHQLVDSNDLHGLFYVMPRVIRTMQDYKVIPLVAVQVTVFPNRGIAVALTAHHSIADAKSFVMFINAWAYINK---------FGKDADLLSANLLPSFDRSIIKDLYGLEETFWN 227
The following BLAST results are available for this feature:
BLAST of CK936843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ANTA_GENTR8.895e-1727.49Anthocyanin 5-aromatic acyltransferase OS=Gentiana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_D02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936843 ID=CK936843; Name=CK936843; organism=Citrus sinensis; type=EST; length=887bp
GGGGGACTAGTAGTATCATTTAGCAGTATTGTTTCTTAATATTTTCACTC
TCTCTCCCTCGTGATCGTCATGGCAGAAAACATAGCGTGAAAATAAATTC
AGTTAGCAAAATCAGCCCGCCGTCGTCCGACTCAGTCACCGCCTCCACTC
TTCCACTCACCTACTTCGATACTCTCTGGCTAAAATTTCCACCTTCAGAA
CGCGTCTTTTTCTATCAAATCACTGACCTAACTTTCGATTTATTCAACTC
AGTGATCCTTCCGAAGCTCGCTGACTCTCTCTCTCTCACTCTCCTTCATT
ACCTCCCCCTCGCCGGTCACATAATGTGGCCTGCGGACTCCGCGAAGCCA
GCCATTTACTACTTCCCTGACCAAAACGACGGCGTCTCATTCACCGTTGC
TGAATCCGACGCCGATTTCAGCCACCTCTCTGGCAATAACGGAAACCGCG
AAGCCGTTGAATTTCATCATCTGACGCCCCAGTTGTCCATAACCGACGAT
AAAGCTGAGGTGGTTGCTATACAAATAACTTTGTTTCCGAAACAAGGGTT
TTGCATATCCGTCTTGACTCACCACGCTGTCATCGACGGGATAAGCAAAA
CAATGTTTGAGAGATCTTGGGCTTATTTCTGCAAACAAATAATTCAGATG
CAACAACAAAACCTTAATAATTCTTCGATATTATTACCCACCAAGCTAAT
CCCGTGCTTTGACCGGACTCTCATCAAAGATCGGAAAGGGCTGGACGTGG
TTTATGCGAACCACTGGCTGGCTTTTCAATCCGACAAGCGAAACTTGAAG
CTCGTTAGTATGCCGGCTCTGAAAGCACATTCCAGCATGGTTCGAAGGAG
TTTCGGATTGACCCGCGAAGACATAAAGAAACTGAGG
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