CK936841

Overview
NameCK936841
Unique NameCK936841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:3891..4622. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_CITSI (Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.861e-80
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SOYBN (Cytochrome b6 OS=Glycine max GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SOLTU (Cytochrome b6 OS=Solanum tuberosum GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SOLLC (Cytochrome b6 OS=Solanum lycopersicum GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SOLBU (Cytochrome b6 OS=Solanum bulbocastanum GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_OENEH (Cytochrome b6 OS=Oenothera elata subsp. hookeri GN=petB PE=3 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_EUCGG (Cytochrome b6 OS=Eucalyptus globulus subsp. globulus GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_ATRBE (Cytochrome b6 OS=Atropa belladonna GN=petB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.687e-79
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_TOBAC (Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.509e-79
Identity = 141/148 (95.27%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQ+GYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAV 148
[Close]
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_PIPCE (Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.509e-79
Identity = 141/148 (95.27%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCL GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+LAVLTASFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPWDQIGYWAV 148
The following BLAST results are available for this feature:
BLAST of CK936841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_CITSI1.861e-8097.30Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2[more]
CYB6_SOYBN2.687e-7995.95Cytochrome b6 OS=Glycine max GN=petB PE=3 SV=1[more]
CYB6_SOLTU2.687e-7995.95Cytochrome b6 OS=Solanum tuberosum GN=petB PE=3 SV... [more]
CYB6_SOLLC2.687e-7995.95Cytochrome b6 OS=Solanum lycopersicum GN=petB PE=3... [more]
CYB6_SOLBU2.687e-7995.95Cytochrome b6 OS=Solanum bulbocastanum GN=petB PE=... [more]
CYB6_OENEH2.687e-7995.95Cytochrome b6 OS=Oenothera elata subsp. hookeri GN... [more]
CYB6_EUCGG2.687e-7995.95Cytochrome b6 OS=Eucalyptus globulus subsp. globul... [more]
CYB6_ATRBE2.687e-7995.95Cytochrome b6 OS=Atropa belladonna GN=petB PE=3 SV... [more]
CYB6_TOBAC3.509e-7995.27Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV... [more]
CYB6_PIPCE3.509e-7995.27Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_C12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936841 ID=CK936841; Name=CK936841; organism=Citrus sinensis; type=EST; length=732bp
AAATAACAAATCAAAGAAAATGAAATAGGTAAATAGAAGATTCAAGAGGC
CTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATTTTTTGGCATT
CTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTCTTTCGTATTT
TTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATTTTCTATTCCA
TACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATGAAATTCTCAT
ATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCTCAATAAAGTC
TACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTGCAGATGATAT
AACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTGNNNG
GAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGGGTTTGCTATG
ACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCTCTGTTCAATA
CATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCGGTTCATCGAT
GGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGTATTTCGCGTG
TATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTTGGGTTACAGG
TGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTT
TACCTTGCGACCAAATTGGATATTGGGCAGTA
back to top