CX675202

Overview
NameCX675202
Unique NameCX675202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:251..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.353e-57
Identity = 108/124 (87.10%), Postives = 120/124 (96.77%), Query Frame = -1
Query:  200 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTI 571
            R+T AAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFPINASI N++ +IEIRNFLGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV +KGTI
Sbjct:   63 RRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.568e-56
Identity = 106/128 (82.81%), Postives = 120/128 (93.75%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RKTSAAIRTALSHV+NLITGVTKG+RYKMRFVYA FPINASI N +KSIEIRNFLGEKKVR+V++LDGV+++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYV EKG +V E+
Sbjct:   66 RKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 3.756e-55
Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNFLGEKKVR+VEMLDGVT++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYV EK  IV E+
Sbjct:   67 RKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.832e-53
Identity = 103/128 (80.47%), Postives = 115/128 (89.84%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNFLGEKKVR+VEMLDGV ++RS+KVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYV EKG I  E+
Sbjct:   67 RKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = -1
Query:  197 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIV 571
            RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+V
Sbjct:   64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVV 188          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 86/128 (67.19%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RK  A IRT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+   D
Sbjct:   64 RKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.437e-39
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+   D
Sbjct:   64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPD 191          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.437e-39
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+   D
Sbjct:   64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.437e-39
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+   D
Sbjct:   64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX675202 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.437e-39
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  188 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKGTIVGED 571
            RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYV EKGT+   D
Sbjct:   64 RKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
The following BLAST results are available for this feature:
BLAST of CX675202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL9_ORYSJ2.353e-5787.1060S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL9_PEA7.568e-5682.8160S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL91_ARATH3.756e-5582.8160S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL92_ARATH7.832e-5380.4760S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ICTPU2.212e-3967.2060S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_MACFA4.928e-3967.1960S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_RAT6.437e-3966.4160S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_MOUSE6.437e-3966.4160S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_HUMAN6.437e-3966.4160S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]
RL9_BOVIN6.437e-3966.4160S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60E05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60E05-I10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675202 ID=CX675202; Name=CX675202; organism=Citrus sinensis; type=EST; length=574bp
TTTTTAGGTATAAAATCCATTTGATACATATTGGAACAAAAGTACATGGA
GTGAAGCAGAAATCTAAAACTCTCTAATACCAAAATTCCAAACGAAAAAA
AAAGGACTTCCCCAACACAGGGCAAAAAGAGCAAGATTAATACCAATTTC
ATGATAATAATGTGACATAAAATTTGAAAGCTAACTAATCCTCTCCAACA
ATTGTGCCCTTCTCAATGACATAGATCCCGTCTAAGAATTTCCTGATATC
TTTGTTCTTCACATGGCATTTCTGATTGATCAAAGCAGCGGACCGCGACA
CAAGTTCAATGTCATTCCCATCAAGAATGAGTTCATCCTTAACCTTGTCA
GACCGAAGAACGGTAACACCGTCAAGCATTTCCACTCTTCGAACCTTCTT
TTCTCCTAGAAAGTTACGGATCTCAATGGACTTGTCAGCGTTGGCGATGG
AGGCGTTGATGGGAAAGTGAGCGTAGACGAATCTCATCTTGTAACGGTAG
CCCTTGGTAACCCCAGTGATGAGGTTCTGTACATGGCTGAGGGCAGTTCT
GATGGCGGCACTGGTCTTGCGCCT
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