CK936840

Overview
NameCK936840
Unique NameCK936840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11411 contig Csv1_Contig11411:193..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.734e-28
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESG 544
            M+  LMN LRACWRPSS+++    +D AGRQ+GLLWYKD GQH+NGEFSMAVVQANNLLEDQ QIESGPLS L+SG
Sbjct:    1 MIVTLMNLLRACWRPSSNQHARAGSDVAGRQDGLLWYKDTGQHVNGEFSMAVVQANNLLEDQCQIESGPLSFLDSG 76          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.169e-23
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGSLWYF 559
            MLS LMNFL AC  P SD+   +++D+ GRQEGLLW++D+GQH+ G+FSMAVVQAN+LLEDQSQ+ESG LS+ +SG    F
Sbjct:    1 MLSGLMNFLNACLWPRSDQQARSASDSGGRQEGLLWFRDSGQHVFGDFSMAVVQANSLLEDQSQLESGSLSSHDSGPFGTF 81          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.344e-22
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESG 544
            MLS LM  L AC  PSS      S+D+ G+Q+GLLWYKD GQH+ GEFSMAVVQANNLLEDQSQ+ESGPLSTL+SG
Sbjct:    1 MLSTLMKLLSACLWPSSSS--GKSSDSTGKQDGLLWYKDFGQHLVGEFSMAVVQANNLLEDQSQVESGPLSTLDSG 74          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLES 541
            MLS   NFL +C  PSS    HT +D+ G+Q+GLLWYKD+  H+ G+FSMAVVQANNLLEDQSQ+ESGPL+TL S
Sbjct:    1 MLSLFFNFLTSCLWPSSSTTSHTYSDSKGKQDGLLWYKDSAHHLFGDFSMAVVQANNLLEDQSQVESGPLTTLSS 75          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.194e-20
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDRY--VHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLE 538
            MLS  M +LR+CW P+S         +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLED SQ+ESGPLST +
Sbjct:    1 MLSAAMEYLRSCWGPASSPAGRPRKGSDAAGRQDGLLWYKDAGQLVAGEFSMAVVQANNLLEDHSQVESGPLSTTD 76          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.384e-20
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  317 MLSRLMNFLRACWRPSSDR-YVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESG 544
            ML+ +M++ R+CW P S   +    +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLEDQSQ+ESG LS  E G
Sbjct:    1 MLAAVMDYFRSCWGPRSPAGHRVRGSDVAGRQDGLLWYKDAGQLVTGEFSMAVVQANNLLEDQSQVESGALSMAEPG 77          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  329 LMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESG 544
            ++  +  CWR  S +  H++ D  GR +GLLWYKD+G H+ GEFSM+V+QANNLLED S++ESGP+S  +SG
Sbjct:    7 ILRMVAPCWRRPSVKGDHSTRDANGRCDGLLWYKDSGNHVAGEFSMSVIQANNLLEDHSKLESGPVSMFDSG 78          
BLAST of CK936840 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  350 CWRPSS--DRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESG 544
            CWRP    +     S DT GR +GLLWYKD+G HI GEFSMAVVQANNLLED SQ+ESGP+S  ESG
Sbjct:   13 CWRPFGIGEDSSPGSDDTNGRLDGLLWYKDSGNHITGEFSMAVVQANNLLEDHSQLESGPISLHESG 79          
The following BLAST results are available for this feature:
BLAST of CK936840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
P2C60_ORYSJ3.734e-2875.00Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C64_ARATH6.169e-2362.96Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C46_ARATH2.344e-2271.05Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C79_ARATH6.820e-2265.33Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C72_ORYSJ2.194e-2064.47Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C28_ORYSJ6.384e-2062.34Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C38_ARATH5.975e-1854.17Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C48_ARATH1.019e-1767.16Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_C11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936840 ID=CK936840; Name=CK936840; organism=Citrus sinensis; type=EST; length=561bp
TTTTTTTTTTTTCATTCAAATTAAAAATTTAGTTTTTATAGAAAAGATAG
AAAAAAATCACGAAGCTTTGAAGTAAACAGAAGCTACGGTGTGATTTGGT
GGATCTATAGATCAAGCGGTGTTAAACCCTTGCATGTATTGCTCTGTTTC
ATTTAGATCTCCATCGTTTTCATCACTTTAGCTGACGGGAAACTCTGCAA
CCAGCCTGATTTTTTGTCGTGAAAGAATTCTGGGTGGGATTTTTTTTAGG
AATTGTATTTGCATCCAATTCTGGATGTGGAAGAATAGGAGGCTGTTGGC
TGAGGTGAGATGAGGGATGTTATCAAGGTTGATGAACTTTCTGAGGGCCT
GCTGGCGGCCGTCCTCGGACCGATATGTCCATACGAGTGCGGATACAGCA
GGCCGGCAAGAGGGGCTACTTTGGTACAAAGACAATGGGCAACACATAAA
TGGTGAATTCTCTATGGCCGTTGTTCAGGCTAACAATTTGCTTGAGGACC
AGAGCCAGATTGAGTCTGGCCCCTTGAGCACTCTTGAGTCTGGGTCCTTA
TGGTACTTTTA
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