CK936829

Overview
NameCK936829
Unique NameCK936829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936829_ssr268 microsatellite CK936829_ssr268:268..279. BLAST: Citrus ESTs to SwissProt
Csv1_Contig6352 contig Csv1_Contig6352:716..1036. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_CITSI (Photosystem I assembly protein ycf3 OS=Citrus sinensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.362e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_VITVI (Photosystem I assembly protein ycf3 OS=Vitis vinifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_RANMC (Photosystem I assembly protein ycf3 OS=Ranunculus macranthus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PANGI (Photosystem I assembly protein ycf3 OS=Panax ginseng GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_OENEH (Photosystem I assembly protein ycf3 OS=Oenothera elata subsp. hookeri GN=ycf3 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_NANDO (Photosystem I assembly protein ycf3 OS=Nandina domestica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_LEMMI (Photosystem I assembly protein ycf3 OS=Lemna minor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_LACSA (Photosystem I assembly protein ycf3 OS=Lactuca sativa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_JASNU (Photosystem I assembly protein ycf3 OS=Jasminum nudiflorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_IPOPU (Photosystem I assembly protein ycf3 OS=Ipomoea purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
The following BLAST results are available for this feature:
BLAST of CK936829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_CITSI2.362e-17100.00Photosystem I assembly protein ycf3 OS=Citrus sine... [more]
YCF3_VITVI1.172e-1697.62Photosystem I assembly protein ycf3 OS=Vitis vinif... [more]
YCF3_RANMC1.172e-1697.62Photosystem I assembly protein ycf3 OS=Ranunculus ... [more]
YCF3_PANGI1.172e-1697.62Photosystem I assembly protein ycf3 OS=Panax ginse... [more]
YCF3_OENEH1.172e-1697.62Photosystem I assembly protein ycf3 OS=Oenothera e... [more]
YCF3_NANDO1.172e-1697.62Photosystem I assembly protein ycf3 OS=Nandina dom... [more]
YCF3_LEMMI1.172e-1697.62Photosystem I assembly protein ycf3 OS=Lemna minor... [more]
YCF3_LACSA1.172e-1697.62Photosystem I assembly protein ycf3 OS=Lactuca sat... [more]
YCF3_JASNU1.172e-1697.62Photosystem I assembly protein ycf3 OS=Jasminum nu... [more]
YCF3_IPOPU1.172e-1697.62Photosystem I assembly protein ycf3 OS=Ipomoea pur... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936829 ID=CK936829; Name=CK936829; organism=Citrus sinensis; type=EST; length=321bp
GGGTCTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGA
TCATTTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACC
TATGCCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGA
TTGTAGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAA
GAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTT
ACCCCTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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