CK936828

Overview
NameCK936828
Unique NameCK936828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11469 contig Csv1_Contig11469:1..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936828 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.153e-22
Identity = 65/168 (38.69%), Postives = 89/168 (52.98%), Query Frame = 2 
Query:  224 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPP--AKGLHLQQWKPTYAAVRQFSGFVSDSNIGEEAAALQASLAGTEWAAAIEKRHAEDSTSSYIVAQYDSPFEFYNRVNEIWLL 721
            +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + ++        VR F GF S     E+   L AS+   +     EK         Y  A Y+SP +  NR NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195
[Close]
BLAST of CK936828 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 2 
Query:  224 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHLQQWKPTYAAVRQFSGFVSDSNIGEEAAALQASLAGTEWAAAIEKRHAEDSTSSYIVAQYDSPFEFYNRVNEIWLL 721
            +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  + ++        VR F GF S     E+   L A++   E     EK         +  A Y SPF+  +R NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRNNEVWLI 195
The following BLAST results are available for this feature:
BLAST of CK936828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN1.153e-2238.69Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE2.839e-2136.90Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_F02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936828 ID=CK936828; Name=CK936828; organism=Citrus sinensis; type=EST; length=781bp
GGGGATCCATTATCATCACCANNNAGCACCCAGAAGTCTCTCCACTCAAA
AAACAAAAATGGCTGCAGGCTTGAGCATGTTAAAGTTTTCAGTTCTTCTC
GGCCTACTCTCAAATCTGAACTTGGGTTTATGGCCTGAATCTTCAAAGGG
GTTGAAAATATTTCCACCAACATGCAACAGAATTGAGTGTCCAAGCTTTG
AGACCGTTCATGTTGGCAATGGCTTTGAAATTCGTCACTATAATTCGTCC
ATGTGGATGTCTACTTCCCCTATTCAAGATATCTCTCTAGTTCAAGCTAC
CAGAACTGGCTTTCTCCAGCTATTTGATTACATTCAAGGAAAGAACGAAT
ATGAGCAAACAATAGAGATGACAGCTCCAGTAATCACTGAAGTTTTACCA
AGTGATGGACCCTTCTGTGAATCTTCATTCACCGTTAGCTTTTACGTCCC
AAAGGTGAACCAAGCCAACCCACCTCCAGCAAAAGGCCTCCATCTCCAAC
AATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTGTATCA
GACTCGAACATTGGTGAAGAAGCTGCTGCATTGCAAGCCAGCCTTGCAGG
CACTGAATGGGCTGCAGCCATTGAGAAAAGACATGCAGAAGACTCCACTT
CAAGTTACATTGTTGCACAGTATGACTCTCCCTTTGAATTTTACAACAGA
GTGAATGAGATATGGCTTTTGTTTGATTTGGAAGAAGGGTTTGCAATTTG
AGTTTGCAAATCTGGTTTGTAATGAAGAACT
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