CK936820

Overview
NameCK936820
Unique NameCK936820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936820_ssr468 microsatellite CK936820_ssr468:468..479. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:1..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.195e-32
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLNSAA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.450e-32
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N+ ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1
Query:  142 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            ITCGQV++SLAPCI +LR GG   P  CC+GVRSLN+AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.026e-31
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  130 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++N  ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  142 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            ITCGQV+++LAPCIP++R GG  PP  CC+G+R++N+ ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.319e-29
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  142 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            ITCGQV++SLAPCI ++R GG  PP  CC+G+R++N+ ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N+ A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  130 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++N  A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  127 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 417
            P   AITCGQVT++LAPC+ +LR  G  P   CC GV++L ++ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CK936820 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  139 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNSAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 414
            A+TCGQV++++ PC+ + R  G  P   CCSGVRSLNSAARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
The following BLAST results are available for this feature:
BLAST of CK936820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP_HELAN3.195e-3265.98Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU5.450e-3260.82Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
LTP1_MORNI3.533e-3167.39Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MALDO6.026e-3162.50Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE8.702e-3061.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR4.319e-2961.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV1.641e-2854.64Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_PYRCO2.143e-2856.25Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_TOBAC4.775e-2862.89Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_SORBI1.064e-2763.04Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936820 ID=CK936820; Name=CK936820; organism=Citrus sinensis; type=EST; length=631bp
GGGGCACTCAGGCTNNNNNACAGAACCTGATAACTAGCTATAACCAAGCA
AAAGCCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTT
TGCTTTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGC
GGGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGG
AGGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACA
GCGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAA
CGAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCT
TCCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCG
ACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAG
TATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTC
TTTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTT
TGTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTT
TTGAGTGATTAATTATAGTTATTTTGTGGTA
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