CK936819

Overview
NameCK936819
Unique NameCK936819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:226..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936819 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  264 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 416
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK936819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.962e-1878.43Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_G02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936819 ID=CK936819; Name=CK936819; organism=Citrus sinensis; type=EST; length=674bp
GGGGGAAGAAGAGGTTAAAGATTTAGAAACTAGCAGCTAAATTGTAAATT
TAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCT
GATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGT
CAAAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTG
TCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGAC
GCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCG
GTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCC
ACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGAC
TAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGATGTAAATG
AATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGAT
AGTGTCGTTTCGTTTTGGATTTCGCAANNNGTCCTTGTCGTTTTGTTAAT
GCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCT
GCTGACTAAAAGTAAATTAAAGACTGTGATGTTTTTATATCATATAATTT
AATAATTGTATGNNATGTGAGGAT
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