CK936808

Overview
NameCK936808
Unique NameCK936808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936808_ssr433 microsatellite CK936808_ssr433:433..447. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936808_ssr472 microsatellite CK936808_ssr472:472..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1968 contig Csv1_Contig1968:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            K E E+  ++ ++ FTFN+LKLATRNFRP+S++GEGGFGCVFKGW+ E+   P  PGT L +AV
Sbjct:   41 KTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAV 104          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.057e-14
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            + E E+   + L+ F+ ++LK ATRNFRP+S++GEGGFGCVFKGWI E+  AP  PGT + +AV
Sbjct:   42 RTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAV 105          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.075e-14
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            + E E+  +  L+ F+F +LK ATRNFRP+S+LGEGGFGCVFKGWI E       PGT L +AV
Sbjct:   42 RTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAV 105          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            + E E+  +  L+ FTFN+LK AT+NFR ++LLGEGGFGCVFKGWI +       PG+ + VAV
Sbjct:   60 RTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAV 123          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            + E E+  +  L+ FTF +LK ATRNFRP+S+LGEGGFG VFKGWI E       PGT + +AV
Sbjct:   43 RTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAV 106          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            + E E+  +  L+ FTFN+LK ATRNFRP+SLLGEGGFG VFKGWI         PG+ + VAV
Sbjct:   57 RTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAV 120          
BLAST of CK936808 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  679 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIKENGTAPXXPGTXLTVAV 870
            K E E+  ++ ++ F+FN+LKLATRNFR +S++GEGGFGCVF+GW+ E    P    + L +AV
Sbjct:   35 KTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAV 98          
The following BLAST results are available for this feature:
BLAST of CK936808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BIK1_ARATH1.129e-1659.38Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
NAK_ARATH1.057e-1454.69Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1A_ARATH3.075e-1456.25Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK2A_ARATH3.400e-1353.13Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH4.441e-1354.69Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK2B_ARATH7.575e-1356.25Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y3545_ARATH9.893e-1350.00Probable receptor-like protein kinase At3g55450 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936808 ID=CK936808; Name=CK936808; organism=Citrus sinensis; type=EST; length=871bp
GGGGGAGATTTGTTTGTTTCTGCTTTTATTCTATTTTATTTTTGTTGTTG
CGAGATCAAGCTTGTTTGTTGATACCAAAGTAAAGTACTTCAGTTTTGAG
TTCAGACAAAAACTTGATCAATCTCAAGTTACATCCTTTTTTATCTAGTT
CATGTGATCTAGCTCTTACCTCAACAGGGTTAGTTTTTTTATTTTTTTCC
TCTTTTGCATTTTTTTCACTTGGTTTTGTCTTTTGGTTGGTTTTGAAGTG
AAAGAAAAGCTTAAATTTTGAAACTTTTTGGTGGCTCTTAAGTGTGAGGT
GAGAGTAAAGAAGTGATTTTTTGAGGGGGGGTTGATGAGTTTTAGGGTTT
GTTGAGAGACAAAAGAATGGGGTTTGATGGTGAAAATGGGAAAGTGAAGA
AGGCTTCTTGGGATTCGAGCAAATCAAAGGCAAAGAAGAAGAAGAAGAAA
GTTGAAGATGAAGTTGAAGTTGAAGAAGAAGAAGAAACTGGGTGTTGGGT
CAAGTTGAGATTTTTTGGAAGCTGCATTTCTTCAAGATCCAAAGTTGATA
GCTCCGTGAGTGGCACCAGTACCCATTATGAAAGTAAATCTACAAATGAT
ACAAGTAGGGACCAACCGGCAGCTGCTGTTATCTCATCTACAACCACTAG
TAATGCAGAAAGTAATTCCTCCACTTCTAAGCTTGAAGAAGAGCTAAAAG
TTGCTTCTCGGCTACGGAAATTCACATTTAATGATCTTAAGTTGGCGACA
CGAAATTTTAGGCCTGAGAGTCTTCTTGGAGAAGGTGGTTTTGGTTGTGT
TTTCAAGGGCTGGATAAAAGAAAATGGAACTGCTCCAGNNNAACCTGGCA
CGGNACTTACTGTTGCAGTAA
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