CK936806

Overview
NameCK936806
Unique NameCK936806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12391 contig Csv1_Contig12391:3..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 8.343e-100
Identity = 178/202 (88.12%), Postives = 182/202 (90.10%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGMMPSD T+GVAHDAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 5.408e-99
Identity = 176/202 (87.13%), Postives = 181/202 (89.60%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.505e-98
Identity = 174/202 (86.14%), Postives = 181/202 (89.60%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.505e-98
Identity = 174/202 (86.14%), Postives = 181/202 (89.60%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD ++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.809e-98
Identity = 174/202 (86.14%), Postives = 181/202 (89.60%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI+ DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.967e-97
Identity = 173/202 (85.64%), Postives = 181/202 (89.60%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI  DG MPSD+++GVAHDAFNTFFSET +G+HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.923e-96
Identity = 172/202 (85.15%), Postives = 179/202 (88.61%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGN+CWELYCLEHGI  DG MPSD T+GVAHDAFNTFFSET AG+HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL RVR+L+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.777e-95
Identity = 168/202 (83.17%), Postives = 177/202 (87.62%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G   DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.777e-95
Identity = 168/202 (83.17%), Postives = 177/202 (87.62%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G   DAFNTFFSET AG+HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAV
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAV 202
[Close]
BLAST of CK936806 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.777e-95
Identity = 168/202 (83.17%), Postives = 179/202 (88.61%), Query Frame = 2 
Query:  140 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 745
            MREIISIHIGQAGIQVGNSCWELYCLEHGI PDG MPSD+T+G  HDAFNTFFSETS+G+HVPRAVF+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVD CL+R+RKL+DNCTGLQGFLVFNAV                 VD+GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDV V
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVV 202
The following BLAST results are available for this feature:
BLAST of CK936806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA3_ARATH8.343e-10088.12Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA1_ORYSJ5.408e-9987.13Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA6_MAIZE3.505e-9886.14Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA3_ELEIN3.505e-9886.14Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_HORVU7.809e-9886.14Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA5_MAIZE2.967e-9785.64Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA_AVESA1.923e-9685.15Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA4_GOSHI2.777e-9583.17Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI2.777e-9583.17Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_ARATH2.777e-9583.17Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_G08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936806 ID=CK936806; Name=CK936806; organism=Citrus sinensis; type=EST; length=749bp
GGGGGAGCAATACAAGATCATTTTCGCCGGTTTTTGAGATCGAACAACGT
GGTTTAGCTTTAAAGTGTAGGGGAACAGAAAGGAAAAGGGAGGAAATTAG
GGTTCTTGGGCTTGTGGGTATTTTGGAAAAGGCAAAGAAATGAGAGAAAT
TATAAGTATACACATTGGGCAAGCTGGGATTCAAGTGGGGAATTCATGCT
GGGAGCTTTATTGCCTAGAACATGGCATTCATCCTGATGGCATGATGCCC
AGTGACAATACAATAGGTGTAGCCCATGATGCCTTCAATACATTCTTCAG
TGAAACCAGTGCTGGCAGGCATGTGCCCAGAGCTGTGTTTGTTGATCTTG
AACCAACTGTCATTGATGAAGTTAGAACGGGTAGCTACCGCCAGCTTTTC
CACCCAGAGCAGCTTATCTCTGGCAAGGAAGATGCTGCTAACAATTTTGC
AAGAGGGCATTATACTGTTGGGAAGGAAATTGTGGATCTTTGCCTTGATC
GTGTTCGAAAGTTATCTGATAACTGCACTGGGTTGCAAGGGTTTTTGGTG
TTCAATGCTGTTGGGGGTGGTACTGGTTCCGGTCTGGGGTCGTTGTTACT
GGAACGCCTATCTGTAGATTATGGAAAGAAGTCAAAGCTTGGCTTCACTA
TCTACCCTTCTCCTCAGGTATCAACAGCAGTTGTGGAGCCTTATAACAGT
GTTCTGTCTACTCATTCCCTTCTTGAACACACAGATGTTGCTGTGCNNN
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