CK936805

Overview
NameCK936805
Unique NameCK936805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1686..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.104e-58
Identity = 123/155 (79.35%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQF 468
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RFLLQEQF
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQEAIQEQKERFLLQEQF 507          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.650e-56
Identity = 119/154 (77.27%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQKERFLLQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.134e-55
Identity = 118/154 (76.62%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLKEAIQEQMERFILQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 117/154 (75.97%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 117/154 (75.97%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 117/154 (75.97%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 117/154 (75.97%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.527e-55
Identity = 117/154 (75.97%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF++QEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFVELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKEAIQEQKERFVIQEQ 506          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.527e-55
Identity = 118/153 (77.12%), Postives = 120/153 (78.43%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 462
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQE
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETILKEAIQEQMERFLLQE 505          
BLAST of CK936805 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.300e-55
Identity = 116/154 (75.32%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    4 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 465
            GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQI+TIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  353 GIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQILTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEAILKEAIQEQRERFILQEQ 506          
The following BLAST results are available for this feature:
BLAST of CK936805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CITSI7.104e-5879.35ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_EUCGG6.650e-5677.27ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DAUCA1.134e-5576.62ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_TOBAC1.481e-5575.97ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO1.481e-5575.97ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY1.481e-5575.97ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_ATRBE1.481e-5575.97ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]
ATPA_MANES2.527e-5575.97ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_CARPA2.527e-5577.12ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_HELAN3.300e-5575.32ATP synthase subunit alpha, chloroplastic OS=Helia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_G07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936805 ID=CK936805; Name=CK936805; organism=Citrus sinensis; type=EST; length=542bp
GGGGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAGTAGG
ATCCGCAGCTCAAATTAAAGCTATGAAACAAGTAGCCGGCAAATTAAAAT
TGGAATTGGCGCAATTCGCAGAATTAGAAGCCTTTGCACAATTTGCTTCT
GATCTCGATAAAGCTACTCAGAACCAATTGGCAAGGGGTCAACGCTTACG
TGAGTTGCTCAAACAGGCCCAAGCAGCCCCTCTCACGGTGGAAGAACAGA
TAATGACTATTTATACAGGAACGAATGGTTATCTTGATTCATTAGAAATT
GGTCAAGTAAGAAAATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAA
TAAACCTCAGTTCCAAGAAATAATATCTTCTACCAAGATATTCACCGAAG
AAGCAGAAGCCCTTTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTT
CTACTTCAGGAACAATTCTAAATAAAAAACCACTCTTATTCTTACTTTAT
AATACTTAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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