CK936794

Overview
NameCK936794
Unique NameCK936794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7373 contig Csv1_Contig7373:485..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936794 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 2 
Query:   92 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFE--SELENISSPPPA-------NDADALMKNLRVSKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 538
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S +  S  + ++    A       N A++  + +  SK S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CK936794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH3.226e-1736.02Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_H06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936794 ID=CK936794; Name=CK936794; organism=Citrus sinensis; type=EST; length=778bp
GGGGAACACGTAGCAAAACGAGAAAATATCTTATCTCAAATCAAAGATCA
GAAGTGAGAATTGGACTTTGATGGCGCTAGTTTCAGGAAGGTCGACGTTG
AACCCCAATGCCCCACTCTTCATTCCAGCTGCTTTTCGCCAAGTGGAGGA
TTTCTCCCCCGAATGGTGGCAGCTGATCACGACCTCCACATGGTACCACA
ACTACTGGCTCAGCCAGCATCAAGATGAGGATGGCTTTTATGACAATGGT
GGAGATGATGAATTTGATGTCAGCAATGTAGCTGACTTGCTTCCAGATAC
GTTTGACCTTGATGCTGGCGAAAATTTCTCTAGCATAGAAGCTCAATTCG
ATGAGTTTGTTATGTCGTTTGAAAGTGAACTGGAAAACATTTCATCCCCA
CCGCCTGCAAATGACGCAGATGCACTGATGAAGAATTTGAGGGTGTCGAA
ATCTTCCATGGAAGCTGCCAAATATGTTGAGAAGCCGGCCAAGTATGTGA
ACCCAAAGTGCAGCCCCCGCCGCATCCAGCAACCCCGTTGAAGAGGGAAA
ATGTGCAATGACTGTTGTTTGCAGTATGTGGTTTTTTGCTTTCTGTAGTT
GCTGTATAGAGCAAGGCTCTATCTCTTTGTATAACTCCTTGTTCATTCTC
GTCTTTAATTTCAGTGAAACAAAGAATCATTGGGGAAAAAAATTGTAAAA
AAAAAGATGTACAATTTAGGATAAATGAAACNNNAAATTGTTCTCTTTCG
TCTTCCTCACTGAATCTCCCTCAAGTGC
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