CX675192

Overview
NameCX675192
Unique NameCX675192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3230 contig Csv1_Contig3230:238..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675192 vs. ExPASy Swiss-Prot
Match: CB029_RAT (UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.449e-22
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3 
Query:  168 QDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 341
            +DKYMQNRLVRLVCVFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  434 KDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 491
[Close]
BLAST of CX675192 vs. ExPASy Swiss-Prot
Match: CB029_MOUSE (UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.449e-22
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3 
Query:  168 QDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 341
            +DKYMQNRLVRLVCVFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  435 KDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 492
[Close]
BLAST of CX675192 vs. ExPASy Swiss-Prot
Match: CB029_HUMAN (UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.449e-22
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3 
Query:  168 QDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 341
            +DKYMQNRLVRLVCVFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  440 KDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 497
[Close]
BLAST of CX675192 vs. ExPASy Swiss-Prot
Match: CB029_DANRE (UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.449e-22
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3 
Query:  168 QDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLLKTL 341
            +DKYMQNRLVRLVCVFLQSLIRN+II+V+DLFIEVQAFCIEFSRIREAA LFRLLKTL
Sbjct:  375 KDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 432
[Close]
BLAST of CX675192 vs. ExPASy Swiss-Prot
Match: CB029_DICDI (UPF0760 protein DDB_G0279005 OS=Dictyostelium discoideum GN=DDB_G0279005 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.614e-14
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = -3 
Query:  177 QDKYMQNRLVRLVCVFLQSLIRNRIIDVKDLFIEVQAFCIEFSRIREAATLFRLL 341
            +DK MQ R VRLVCVF+QSLIRN II++K+LF EVQ FC+EFS+IREA +LF+ +
Sbjct:  532 KDKAMQQRSVRLVCVFIQSLIRNNIINIKNLFCEVQTFCLEFSKIREAISLFKAI 586
The following BLAST results are available for this feature:
BLAST of CX675192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CB029_RAT4.449e-2291.38UPF0760 protein C2orf29 homolog OS=Rattus norvegic... [more]
CB029_MOUSE4.449e-2291.38UPF0760 protein C2orf29 homolog OS=Mus musculus GN... [more]
CB029_HUMAN4.449e-2291.38UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29... [more]
CB029_DANRE4.449e-2291.38UPF0760 protein C2orf29 homolog OS=Danio rerio GN=... [more]
CB029_DICDI2.614e-1467.27UPF0760 protein DDB_G0279005 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60D12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60D12-G24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675192 ID=CX675192; Name=CX675192; organism=Citrus sinensis; type=EST; length=937bp
TTTTTTTTAGGCAAGGCAACATTATAGGAGATCTATCATATCTGAAAGTG
CAAATAAAAATTGTTACTATCTACAAAGCAGAGAAGATTTAGAAATGATA
CTACACAGGAGAGAGAATCGCTCGAGACAGGACTGTCTATGAATTCAGGG
TTCATTCATTCCAAACCCAAGGTTTTAAGAAGCCTGAATAATGTTGCAGC
TTCTCTAATTCTTGAGAATTCAATGCAAAAGGCTTGGACTTCGATGAAGA
GATCCTTAACATCAATTATTCTGTTTCGGATTAGACTCTGTAAGAAAACA
CATACAAGTCGTACAAGTCTGTTCTGCATGTACTTATCCTGACAAATGAG
AGAAACACTTGTGAACCTAACAGACAATAAGTACAAAGTTTCAATGTCAT
CAAAAGATTTTGTCCAAAACATATAATCAACTAGCATTCTATATAGTCCG
TGTAACCCATTTTACATTTTGTTTCCTTTGGTGTGGTCAAATCAAATTGA
AGAGGACTAAACGGGTTAAAAATAGGGAGATGAAGAAAGGTCCATCTCAA
GATTACAACGCTTCATATTCAAAAGTATCTAAAGCACATTTTGTACCATA
CAGAACATCCAATTTTAGTGCAGCAAAGCCTCCCATTTCTCCAAAAGTGA
AAAAATAGAGAGGAATAATGAAATTCTTCAGCAACTGAAACACATATTGA
TGCCAAACAATGAATTTCACAGCACAGCANACTGGTTTCCTCGTCTATAG
TATTAGGTTGAAGACTACTATTTGGTTTTGCGAAAGAATTATGTCAAACT
AGAATCTAGGTCACTCAACCTTAAATAATGCAAAGCAAACAACCGACTTG
AAGCTTCACTAGAAACTTAGGCCGAAGTGCATTGTGGACTTCACAGTGAA
ATTCGTGTTTGTGATTATACGTGCTTGTAAGACCAAA
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