CX675191

Overview
NameCX675191
Unique NameCX675191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675191_ssr148 microsatellite CX675191_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5479 contig Csv1_Contig5479:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675191 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34
Identity = 82/156 (52.56%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:  199 KNKQKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGTGAVTNVTLRQPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXXXXXXXXPLTASGTVVLMAASFANAVYDRLPLELQE 666
            KNK KPPIIVTRD+PNALRSHVLE+S GADIV+SVSTYARRRGRGV +L G G V+NVTLRQP                  +TLHGRFEI                    I+LA             PL AS  V+LMAASF+NAV++RLP+E +E
Sbjct:   96 KNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGV---VTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEEEE 248
The following BLAST results are available for this feature:
BLAST of CX675191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH3.925e-3452.56Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60D11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60D11-G22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675191 ID=CX675191; Name=CX675191; organism=Citrus sinensis; type=EST; length=793bp
GTTCATCAGCTGTTGGGGCCATCCGAGCTGCAGCTACAACCCCAACACCA
CCAAGCAGATTCAGCGGACAAAGATATCGATGAAAGAAGTCATGATCAGT
CCGCAGCAGCAGGAGGCAATAACACTACCAGTTCTGGTTCTGGTTCAGGC
GGCGGCGGCGGTGCGGGGCGGAGGCCTCGCGGACGTCCTGCGGGTTCAAA
GAACAAGCAGAAGCCACCAATAATCGTAACTAGAGACACCCCTAATGCAC
TTAGATCCCATGTCCTTGAAATATCATCTGGCGCTGACATTGTGGACTCC
GTTTCAACCTATGCAAGGCGTCGTGGCCGTGGTGTTTGTATTCTCAGCGG
AACTGGAGCTGTTACTAATGTCACACTCAGGCAACCACCAGCTGGAGCTG
GTGGCAGCAGCAGTGCTAGTAGCGCTGGTGGTGCTGTCAACATAACACTT
CACGGCCGCTTTGAGATTTTGTCACTCACTGGAACTTCACTTCCACCTCC
GGCACCCCCCGGAGCTGGTGGCTTGACTATATATTTAGCAGGTGGGCAGG
GCCAAGTTGTCGGAGGGAGCGTGGTGGGCCCTTTGACTGCTTCAGGTACT
GTGGTTTTGATGGCCGCTTCTTTTGCAAATGCAGTCTACGATAGGTTACC
CCTTGAGCTTCAGGAGGATGCAGACTCCACTACGCCACCACCGGCAGCCT
CTCAGTCTTCAGGAGTGACAGGTGGCGGCGGACAATTGGGAGACGGTGGC
GTGCCTTGGCCTTTTCATAATTTGGGAATTATGAATATGGGAA
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