CX675189

Overview
NameCX675189
Unique NameCX675189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:46..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.274e-70
Identity = 128/132 (96.97%), Postives = 131/132 (99.24%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            VANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH
Sbjct:    4 VANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.208e-56
Identity = 101/132 (76.52%), Postives = 120/132 (90.91%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    4 VIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.691e-56
Identity = 100/129 (77.52%), Postives = 119/129 (92.25%), Query Frame = 2
Query:   80 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    7 EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.637e-53
Identity = 95/132 (71.97%), Postives = 115/132 (87.12%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    5 VQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.750e-53
Identity = 94/132 (71.21%), Postives = 117/132 (88.64%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.805e-52
Identity = 93/132 (70.45%), Postives = 117/132 (88.64%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 93/132 (70.45%), Postives = 116/132 (87.88%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 93/132 (70.45%), Postives = 116/132 (87.88%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 93/132 (70.45%), Postives = 116/132 (87.88%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
BLAST of CX675189 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 93/132 (70.45%), Postives = 116/132 (87.88%), Query Frame = 2
Query:   71 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 466
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135          
The following BLAST results are available for this feature:
BLAST of CX675189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH3.274e-7096.9740S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.208e-5676.5240S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR2.691e-5677.5240S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_CHLRE3.637e-5371.9740S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_DANRE4.750e-5371.2140S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU1.805e-5270.4540S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT2.357e-5270.4540S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG2.357e-5270.4540S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE2.357e-5270.4540S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN2.357e-5270.4540S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60D10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60D10-G20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675189 ID=CX675189; Name=CX675189; organism=Citrus sinensis; type=EST; length=668bp
GCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCT
CACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTG
CGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCT
TACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGA
AAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAA
CTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCC
TGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTC
AGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGT
CTGAAGAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCG
TGTCCGTGGACAACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTG
GTGTCTCCNAGAAGCGTTGAGCTGTCCGTTATCAATGTTTTGAACAATCT
ATACACATGTTCAGGAAGAGTTTGGACTTGCTATTGCTGAACATTTGCAT
CAAACAATATTAGATTTATTTTCTTTTCTTTGGATGGGTTTTAAGCATTT
GAACTGTCTGTCTTTTAT
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