CK936753

Overview
NameCK936753
Unique NameCK936753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936753_ssr475 microsatellite CK936753_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12082 contig Csv1_Contig12082:42..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936753 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.229e-51
Identity = 122/264 (46.21%), Postives = 151/264 (57.20%), Query Frame = 1
Query:   55 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRRGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRAPSSSKAFTGTARLLSGETVSSAP----APPPENVSHNITFWRNGFTVDDGPLRRMDDPANASFLESI 807
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS+P       P+ + H ITFW NGFTV+DGPLR   DP NA+F+ SI
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSI 265          
BLAST of CK936753 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 56/165 (33.94%), Postives = 77/165 (46.67%), Query Frame = 1
Query:  376 KKEDKKAATGTSRGGIRTLADLNRTPPGGAXXXXXXXEP----QQYYTGGEKSGMLVQDPTK-------GNQVDEIFNQAR--------QSAVERPDLRAPSSSKAFTGTARLLSGETVSSAPAPPPEN--VSHNITFWRNGFTVDDGPLRRMDDPANASFLESI 807
            K   KKA  G   GGIRTL+D N              +     QQY+TGGEKSG++V+   K       G+ V+++F+ A+        +  VE+PD      S  +   A       VS      P +  V   +TFW  GFT+DDGPLR+ D+P N   L+ I
Sbjct:   86 KTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPD---SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDI 247          
BLAST of CK936753 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.314e-13
Identity = 48/116 (41.38%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  487 EPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRAPSSSKAFTGTARLLSGETVSS-------APAPP--PENVSHNITFWRNGFTVDDGPLRRMDDPANASFLESI 807
            E Q ++ GGEKSG+ VQ+P    +  +I  +AR++ +   D   P  +  FTG AR L GE   S        PA P  P  V   + FW +GF+VDDG L R DDP NA  L SI
Sbjct:  102 ENQDFFAGGEKSGLAVQNPDDLKK--KIIEKARRTQLPASDDSEPRRNY-FTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNSI 214          
The following BLAST results are available for this feature:
BLAST of CK936753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBAX1_ARATH6.229e-5146.21UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI9.395e-1533.94NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI2.314e-1341.38UBX domain-containing protein 1 OS=Emericella nidu... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004518_F01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936753 ID=CK936753; Name=CK936753; organism=Citrus sinensis; type=EST; length=808bp
GGGACCGAATCGAAAAATCGAAAACGAATCGGATCAATGGAGAACCCAAC
AGCAGAAGCTAACTCTTCTTTAATCAATTCTTTCGTGGAGATCACATCAT
CCACCAAAGACGAAGCTCTCTTCTTCTTGGAGTCTCATCAGTGGAATCTA
GACGCCGCCGTTTCGACTTTTCTAGACAACGCCGCAGCGGCCACCGCCTC
CCCCGAAGCATCTCAATCGGTCGCTACTCTCCCTGCCGTTAACTCCCCGT
CGCTTTCAAACTCCCCCTCGACCTCTCCGTCTGCGTCTTTGTCTCGTTCC
CCGTCCCGGTCTCGGTCGCCATCACCTGCTGCGGCTCGCGATCCGTACGA
GCTGCGTTCCCGAAGCCGACGGGGGAAGAAGGAGGATAAGAAGGCGGCGA
CTGGGACATCACGTGGGGGCATTCGGACTCTTGCTGATCTGAATAGGACT
CCTCCTGGTGGGGCCGATAGCGATGACGACGACGACGAGCCGCAGCAGTA
TTATACTGGTGGTGAGAAGAGCGGGATGCTGGTCCAAGATCCTACCAAAG
GAAATCAAGTGGATGAAATTTTCAATCAAGCTAGACAATCAGCTGTAGAA
AGGCCTGACCTTCGAGCACCATCGAGCTCAAAAGCCTTCACTGGAACAGC
AAGGTTACTCTCTGGAGAGACAGTATCATCTGCTCCAGCTCCTCCGCCTG
AAAATGTCTCACACAACATCACTTTTTGGAGGAATGGGTTCACTGTAGAT
GATGGTCCATTGCGGAGGATGGATGATCCTGCAAATGCTTCCTTTTTGGA
GAGCATCA
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