CK936749

Overview
NameCK936749
Unique NameCK936749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:320..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.371e-42
Identity = 87/107 (81.31%), Postives = 100/107 (93.46%), Query Frame = 3
Query:    3 NELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            N+LI+ LI RVDL+E EA++SL++LLNEA+EALISAFLVLLRAKGET+ EIVGLARAM+K+A KVEGL DAVDIVGTGGDGANTVNISTG+SIL AACGAKVAKQG+
Sbjct:  109 NQLIETLIDRVDLSETEAESSLEFLLNEANEALISAFLVLLRAKGETYEEIVGLARAMMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGN 215          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_ACIC1 (Anthranilate phosphoribosyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 54/107 (50.47%), Postives = 77/107 (71.96%), Query Frame = 3
Query:    6 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            E++  L++R DLTEAEA  ++  +++ EA +A I+AF V LRAKGE+  E+ GL+  M+  A  V  +G+A+DIVG+GGD A+TVNIST A+I+ AA G  VAK G+
Sbjct:   10 EVLSALLARRDLTEAEAAWAMHQIMSGEATDAQIAAFAVALRAKGESAEEVSGLSSVMLALAAPVPPIGEALDIVGSGGDRAHTVNISTMAAIVAAATGVVVAKHGN 116          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_STRAW (Anthranilate phosphoribosyltransferase OS=Streptomyces avermitilis GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 3
Query:    6 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            E+++ L+   D +  +   ++D ++  EA +A I+ FLV LRAKGET  EI GL RAM ++A  +E  G  VDIVGTGGDGA TVNIST +SI+VA  GAKV K G+
Sbjct:   19 EVLNGLLDGRDQSADDTAWAMDRIMRGEATDAQIAGFLVALRAKGETVEEISGLVRAMYEHANLIEVPGATVDIVGTGGDGAKTVNISTMSSIVVAGTGAKVVKHGN 125          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_ARTS2 (Anthranilate phosphoribosyltransferase OS=Arthrobacter sp. (strain FB24) GN=trpD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.994e-19
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 3
Query:    9 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            LI  LI+  DLT    + ++D +++ EA  + I+ FLV LR+KGET  EI GL  AM+ +A  V+  G+ +DIVGTGGD  NTVNIST A+++ A  GAKV K G+
Sbjct:   17 LISALINGADLTADNTEWAMDTIMSGEATPSQIAGFLVALRSKGETVDEIAGLVEAMLAHANPVDIAGEKLDIVGTGGDQLNTVNISTMAALVCAGAGAKVVKHGN 122          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_STRGG (Anthranilate phosphoribosyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.897e-19
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 3
Query:    9 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            L++ L+   DL+  E   ++D +++ EA +A I+ F V LRAKGET  E+ GL RAM  +A  +E  G  VDIVGTGGD A TVNIST ++I++A  GAKV K G+
Sbjct:   20 LLNPLLRGEDLSAEETAWAMDRIMSGEATDAQIAGFAVALRAKGETVDEVTGLVRAMYAHANTIEVPGRTVDIVGTGGDLAKTVNISTMSAIVIAGTGAKVVKHGN 125          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_ARTAT (Anthranilate phosphoribosyltransferase OS=Arthrobacter aurescens (strain TC1) GN=trpD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 3
Query:    9 LIDCLISRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            LI  LI+  DL     + +++ ++  EA  A I+ FLV LRAKGET  E+ GL  AM+++A  ++  G+ +DIVGTGGD  NTVNIST A+++ A  GAKV K G+
Sbjct:   17 LISALINGDDLAVGNTEWAMNTIMAGEATPAQIAGFLVALRAKGETVEELAGLVEAMVQHANPIDISGEKLDIVGTGGDRLNTVNISTMAALVAAGAGAKVVKHGN 122          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_METSB (Anthranilate phosphoribosyltransferase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.761e-18
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 3
Query:    9 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            L+  L +   LT+AEA  + D +    A  A + AFL+ LR +GET  EIVG   AM    ++V+   DA+DIVGTGGDG +T N+ST A+++V+ACG  VAK G+
Sbjct:    7 LLGKLATGASLTQAEATRAFDLIFEGAATPAQLGAFLMALRVRGETIDEIVGAVAAMRARMLRVDAPADAMDIVGTGGDGHSTYNVSTLAALIVSACGVPVAKHGN 112          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_CHLFF (Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.761e-18
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 3
Query:   12 IDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            +  ++++  LT  EA++  + +LN +D   I+AFL +L+ +GET  EI G+  A+ K A  V+    A+DIVGTGGD ANTVNISTG++IL AACG  +AK G+
Sbjct:    6 LQSIMNQSHLTYDEAESVTNLMLNGSDPHQIAAFLAVLKYRGETPTEIAGMVSALQKQATSVDLPFPALDIVGTGGDLANTVNISTGSAILSAACGIPIAKHGN 109          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_BEII9 (Anthranilate phosphoribosyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=trpD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.761e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   39 LTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            LT AEA+A+ D +   E   A +  FL+ +R +GET  EI+G   AM    ++V+   DA+DIVGTGGDG  T N+ST AS++VAACG  VAK G+
Sbjct:   17 LTRAEAEAAFDQIFAGEVTPAQLGGFLMAMRVRGETVDEIIGAVTAMRARMVRVDAPTDAIDIVGTGGDGHGTFNVSTLASLIVAACGVPVAKHGN 112          
BLAST of CK936749 vs. ExPASy Swiss-Prot
Match: TRPD_CHLCV (Anthranilate phosphoribosyltransferase OS=Chlamydophila caviae GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.094e-17
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   12 IDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAMKVEGLGDAVDIVGTGGDGANTVNISTGASILVAACGAKVAKQGS 323
            +  ++++  LT  E ++  + +LN AD   I+AFL +L+ +GET  E+ G+  A+ K A  V     A+DIVGTGGD ANTVNISTG++IL AACG  +AK G+
Sbjct:    6 LQSIMNQSHLTYDEVESVTNLMLNGADPHQIAAFLAVLKYRGETPTEVAGMISALQKQATPVNLPFPALDIVGTGGDLANTVNISTGSAILAAACGIPIAKHGN 109          
The following BLAST results are available for this feature:
BLAST of CK936749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 434
Match NameE-valueIdentityDescription
TRPD_ARATH6.371e-4281.31Anthranilate phosphoribosyltransferase, chloroplas... [more]
TRPD_ACIC11.804e-2050.47Anthranilate phosphoribosyltransferase OS=Acidothe... [more]
TRPD_STRAW8.952e-2051.40Anthranilate phosphoribosyltransferase OS=Streptom... [more]
TRPD_ARTS21.994e-1949.06Anthranilate phosphoribosyltransferase OS=Arthroba... [more]
TRPD_STRGG9.897e-1949.06Anthranilate phosphoribosyltransferase OS=Streptom... [more]
TRPD_ARTAT1.688e-1847.17Anthranilate phosphoribosyltransferase OS=Arthroba... [more]
TRPD_METSB3.761e-1846.23Anthranilate phosphoribosyltransferase OS=Methyloc... [more]
TRPD_CHLFF3.761e-1847.12Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]
TRPD_BEII93.761e-1848.96Anthranilate phosphoribosyltransferase OS=Beijerin... [more]
TRPD_CHLCV1.094e-1746.15Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936749 ID=CK936749; Name=CK936749; organism=Citrus sinensis; type=EST; length=324bp
TTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGAGGCG
GAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGGCCTT
GATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTTGGAG
AGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTATGAAGGTGGAA
GGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAA
CACAGTGAACATTTCAACTGGTGCTTCAATTCTTGTTGCAGCTTGTGGTG
CAAAAGTTGCCAAGCAAGGGAGTC
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