EL492603

Overview
NameEL492603
Unique NameEL492603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6524 contig Csv1_Contig6524:320..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492603 vs. ExPASy Swiss-Prot
Match: YZR3_ARATH (RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana GN=At1g67325 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   17 QAAKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAE-SKKSLTPTTEENEQ 196
            Q   SDK SKQ  PEGSWKC+ C NINYPFR+KCNRQNCGADKP + S  S +   EEN+Q
Sbjct:  228 QGGSSDKISKQNAPEGSWKCDNCGNINYPFRSKCNRQNCGADKPGDRSNGSPSRAPEENDQ 288
The following BLAST results are available for this feature:
BLAST of EL492603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YZR3_ARATH1.425e-1765.57RanBP2-type zinc finger protein At1g67325 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC4071 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4071, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492603 ID=EL492603; Name=EL492603; organism=Citrus sinensis; type=EST; length=380bp
GACTGCGTAGTGATCCCAGGCGGCGAAATCTGACAAAAATTCAAAACAAA
AGATGCCCGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTAC
CCATTTAGGACCAAATGCAACAGACAGAATTGTGGAGCTGATAAACCTGC
TGAGTCAAAGAAGTCTCTCACACCAACTACAGAAGAAAATGAGCAGTGAG
TACTAGGACATGTTTGGGGGTTGAGAAGGTCCAGGGTTTTCTTCCAGCAT
TGCTCAATATGGGTGTCTGAAAGTCAGTCTTGTCGTCCTCATGTTGCAGC
GGTTGTCGAGTTACTCTACCTTCTCATGATTCGTGTCAACTTGTTGTATT
ACTCAGGACTCATCATTACTCAGGACTCAT
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