CK936737

Overview
NameCK936737
Unique NameCK936737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1958 contig Csv1_Contig1958:1..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP438_ARATH (Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.964e-73
Identity = 130/174 (74.71%), Postives = 150/174 (86.21%), Query Frame = 2
Query:  281 QRMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 802
            ++ME DYG KRDK+SL LVV+KLCE G+AS AEK+VK+TANEIFPD+ ICDLLI GWC+  KLDEA RLAGEM RGGFE+GT AYN +LDCV KLCRKKDPF+L  E EKVLL+ME+ GVPRN ETFNVLI+NLCKIRRTE+A+ LF RMGEWGC P+  T+LVLI+SLYQAAR
Sbjct:  199 EKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAAR 372          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 54/177 (30.51%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  254 LEADPLPISQRMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKS 784
            L ++ +    RME DYG   DK +  +V+  L     AS A+       +   PD  +   L++GWC  G++ EA+++  EM   G E     Y+ ++D    LCR        S A  V  DM  +G   N  TFN L+    K  RTE  ++++ +M + GC P+  T+  LI++
Sbjct:  201 LASEAVHCFNRME-DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDA---LCRCGQI----SRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  299 YGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI-RRTEDAVKLFYRMGEWGCHPNETTFLVLI 778
            YG + D+     +++ LC+NG    A K+ +D   +  P+ +    L+ GWC +GKL EAK +  +M   G E   V +  +L   +   +  D + L       + DM   G   NV  + VLI  LC+  +R ++A+++F  M  +GC  +  T+  LI
Sbjct:  196 YGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL-------MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALI 349          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.010e-14
Identity = 48/160 (30.00%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  299 YGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLI 778
            +GF+ D+     +++ LC++G    A KL +D       + +    L+ GWC  GK+ EAK +  +M   GFE   V Y  +L   +   +  D + L       L DM   G   N   + VLI  LCK+ R E+A+K+F  M  + C  +  T+  L+
Sbjct:  212 FGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDL-------LRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 55/192 (28.65%), Postives = 91/192 (47.40%), Query Frame = 2
Query:  206 PDQVIARSLSGELLENLEADPLPISQRMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLI 778
            P+ V   +L   L +  + +      R+    G   D  +   +++ LC       A +L ++  ++   PD+   ++LI   C  GKLDEA  +  +M   G     + YN ++D   K  + +       EAE++  +ME +GV RN  T+N LI  LCK RR EDA +L  +M   G  P++ T+  L+
Sbjct:  363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR-------EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP422_ARATH (Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13
Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  314 DKDSLRLVVEKLCENGYASYAEKLVKDT-ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG--VPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKSLYQ 793
            D  +  LV+    + G  + A+ L+K+     ++PD      +I G+C  GK+D+A RLA EM +    L +V Y+ IL+ V K    +    L +E EK     E  G  +  N  T+ ++I   C+ RR E+A+ +  RMG  GC PN  T  VLI+ + +
Sbjct:  164 DTVAYNLVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEMEK-----EDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMPNRVTACVLIQGVLE 321          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PPR18_ARATH (Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.983e-13
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  335 VVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLI 778
            +++  C++     A KL+   + E   P+  + D LI G C  GKLDEA+ +  EM   GF      Y+ ++D   K+ R+         A KVL  M  N    NV  +  +I  LCK+ +T++A KL   M E GC PN  T+  +I
Sbjct:  645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQ-------DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 786          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP211_ARATH (Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.088e-13
Identity = 44/169 (26.04%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  296 DYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 802
            ++G +++ +S+ L+++ LC+      A  ++    + I P+    ++ I GWC   +++EA     EM   GF    ++Y  I+ C    C++ +  ++     ++L +ME NG P N  T+  ++S+L   +  E+A+++  RM   GC P+   +  LI +L +A R
Sbjct:  183 EFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC---YCQQFEFIKV----YEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PP389_ARATH (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 60/201 (29.85%), Postives = 100/201 (49.75%), Query Frame = 2
Query:  206 PDQVIARSLSGELLENLEAD-PLPISQRMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD-TANEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 802
            P+ VI  ++   L ++ + D  L +  RME+D G   D  +   ++  LC +G  S A ++V   T  EI+PD    + LI     +G++ EA+    EM R   +   V Y+ +   +  LC      RLD EAE++   M   G   +V T+++LI+  CK ++ E  +KLF  M + G   N  T+ +LI+   +A +
Sbjct:  184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL---IYGLCMYS---RLD-EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376          
BLAST of CK936737 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.480e-12
Identity = 62/201 (30.85%), Postives = 99/201 (49.25%), Query Frame = 2
Query:  206 PDQVIARSL-SGELLENLEADPLPISQRMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA-NEIFPDDKICDLLIKGWCVDGKLDEAKRLAGEMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRTEDAVKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 802
            PD VI  ++  G     L  D + +  RMERD G + D  +   +V  LC +G  S A +L++D    +I P+      +I  +  +GK  EA +L  EM R   +     YN +   ++ LC      R+D EA+++L  M   G   +V T+N LI+  CK +R ++  KLF  M + G   +  T+  +I+  +QA R
Sbjct:  172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL---INGLCMHG---RVD-EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364          
The following BLAST results are available for this feature:
BLAST of CK936737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PP438_ARATH1.964e-7374.71Pentatricopeptide repeat-containing protein At5g60... [more]
PPR54_ARATH3.524e-1430.51Pentatricopeptide repeat-containing protein At1g20... [more]
PP275_ARATH3.524e-1429.19Pentatricopeptide repeat-containing protein At3g49... [more]
PP447_ARATH6.010e-1430.00Putative pentatricopeptide repeat-containing prote... [more]
PP281_ARATH1.025e-1328.65Pentatricopeptide repeat-containing protein At3g53... [more]
PP422_ARATH2.284e-1332.52Pentatricopeptide repeat-containing protein At5g47... [more]
PPR18_ARATH2.983e-1332.89Pentatricopeptide repeat-containing protein At1g06... [more]
PP211_ARATH5.088e-1326.04Pentatricopeptide repeat-containing protein At3g04... [more]
PP389_ARATH1.133e-1229.85Pentatricopeptide repeat-containing protein At5g16... [more]
PPR93_ARATH1.480e-1230.85Pentatricopeptide repeat-containing protein At1g62... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936737 ID=CK936737; Name=CK936737; organism=Citrus sinensis; type=EST; length=802bp
GGGGACCCCCCTTGATTCTGCCTCTGCGAAAATGCCTCCTTCGACCTCTC
TGCTACTCGGCAGACTTCTCCTTCAACAGCGCCCCCACCGCTTCATTTCT
CCACAATCCACTTATTTTTCCCGTTTTTCCCCCACTCGTTACCTCAATTT
CCTCTCTAAACCCTTTTCCTCTAAACCCACCTCAAACCCTAAAACCATAG
ATGACCCAGATCAAGTAATCGCCCGCTCTCTCTCCGGAGAGTTACTCGAG
AATCTTGAGGCTGACCCATTACCCATTTCTCAGAGAATGGAGAGAGATTA
TGGGTTTAAAAGGGATAAAGATTCTCTTAGATTGGTTGTAGAGAAGTTAT
GTGAAAATGGGTATGCAAGTTATGCGGAGAAATTGGTGAAAGACACTGCT
AATGAGATATTCCCCGATGATAAGATATGTGATTTGTTGATTAAAGGTTG
GTGTGTTGATGGGAAGCTTGATGAAGCAAAAAGATTAGCTGGGGAGATGT
ACAGAGGGGGCTTTGAGCTTGGTACAGTCGCTTACAACTGTATTCTTGAT
TGTGTTTCTAAGCTTTGTAGGAAAAAAGACCCGTTTAGGCTTGATTCTGA
GGCTGAGAAGGTGTTGTTGGATATGGAGTATAATGGGGTTCCAAGAAATG
TGGAGACATTCAATGTGTTGATTAGTAACTTGTGCAAGATTAGGAGAACT
GAGGATGCAGTTAAGTTGTTTTATAGGATGGGAGAATGGGGCTGTCATCC
GAATGAGACTACATTCCTTGTTTTGATTAAGAGTTTGTATCAGGCTGCAA
GG
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