CK936734

Overview
NameCK936734
Unique NameCK936734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9875 contig Csv1_Contig9875:1475..2294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS2_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 2 OS=Arabidopsis thaliana GN=THY-2 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.395e-76
Identity = 129/149 (86.58%), Postives = 145/149 (97.32%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            INKIKNNP+DRRI++SAWNPSDLKLMALPPCHMFA+FY+ANGELSCQMYQRSADMGLGVPFNIASY+LLTC++AHVCDL PGDFIHVIGDAHVY+NHV PL+EQL+  PKPFP+LKINPEKKDIDSFVA+DF+LIGYDPH+KI+MKMAV
Sbjct:  417 INKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIGDAHVYKNHVRPLQEQLENPPKPFPVLKINPEKKDIDSFVADDFELIGYDPHKKIDMKMAV 565          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_SOYBN (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.150e-74
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            INKIK NP+DRRI+LSAWNP DLKLMALPPCHMFA+FY+A+GELSCQMYQRSADMGLG+PFNIASYALLTCMIAHVCDL PGDFIHVIGDAH+YRNHV PL+EQL   PKPFP LKINP+KKDIDSFVA DFKLIGYDPHQKI+MK++V
Sbjct:  382 INKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKLSV 530          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_MAIZE (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Zea mays GN=DRTS PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.042e-73
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+KIKN+P DRRI+LSAWNPSDLK MALPPCHMFA+FY+ NGELSCQMYQRSADMGLGVPFNIASY+LLT MIA VCDL+PGDF+HVIGDAHVYRNHV  LEEQ+QK+PKPFPILKINP KKDIDSF+A DFKL+GYDPHQKIEMKMAV
Sbjct:  373 IDKIKNDPEDRRIILSAWNPSDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTYMIAQVCDLSPGDFVHVIGDAHVYRNHVRALEEQIQKMPKPFPILKINPSKKDIDSFMASDFKLVGYDPHQKIEMKMAV 521          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS1_ARATH (Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 4.548e-73
Identity = 125/149 (83.89%), Postives = 139/149 (93.29%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+KIKNNP+DRRI++SAWNPSDLKLMALPPCHMFA+FY+A GELSCQMYQRSADMGLGVPFNIASY+LLTCM+AHVCDL PGDFIHV+GDAHVY+ HV PL+EQL  LPKPFP++KINPEKK IDSFVA DF L GYDPH+KIEMKMAV
Sbjct:  371 IDKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFYVAEGELSCQMYQRSADMGLGVPFNIASYSLLTCMLAHVCDLVPGDFIHVLGDAHVYKTHVRPLQEQLLNLPKPFPVMKINPEKKQIDSFVASDFDLTGYDPHKKIEMKMAV 519          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_ORYSJ (Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica GN=Os12g0446900 PE=3 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.463e-71
Identity = 125/149 (83.89%), Postives = 137/149 (91.95%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+KIKNNP+DRRI+LSAWNP+DLK MALPPCHMFA+FY+ NGELSCQMYQRSADMGLGVPFNIASY+LLTCMIA VCDL+PGDF+HVIGDAHVYR HV  LEEQ++K PKPFPILKINP KKDIDSFV  DFKL+ YDPH KIEMKMAV
Sbjct:  346 IDKIKNNPDDRRIILSAWNPTDLKKMALPPCHMFAQFYVENGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDIDSFVTSDFKLVRYDPHHKIEMKMAV 494          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: DRTS_DAUCA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.405e-68
Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPL-EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+KIKNNP+DRRI+ SAWNPSDL+LMALPPCHMFA+FY+ANGELSCQMYQRSADMGLGVPFNIA+YALLTCMIAHVCDL PGDF+H IGDAHVY NH+  L E   + LPK FP+LKIN  +KDIDSF A DFKLIGYDPHQKIEMKMAV
Sbjct:  379 ISKIKNNPDDRRIIQSAWNPSDLRLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIAAYALLTCMIAHVCDLVPGDFVHSIGDAHVYSNHLSDLFETSFRMLPKTFPVLKINSGEKDIDSFEAADFKLIGYDPHQKIEMKMAV 528          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_MOUSE (Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.527e-55
Identity = 97/149 (65.10%), Postives = 119/149 (79.87%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP+DRRI++ AWNP DL LMALPPCH   +FY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP LKI  + + ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  159 IDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_RAT (Thymidylate synthase OS=Rattus norvegicus GN=Tyms PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.123e-54
Identity = 96/149 (64.43%), Postives = 119/149 (79.87%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP+DRRI++ AWNP DL LMALPPCH   +FY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDF+H +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I  + + ID F  EDF++ GY+PH  I+M+MAV
Sbjct:  159 IDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_HUMAN (Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 97/149 (65.10%), Postives = 119/149 (79.87%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I+ IK NP+DRRI++ AWNP DL LMALPPCH   +FY+ N ELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+  L PGDFIH +GDAH+Y NH+ PL+ QLQ+ P+PFP L+I  + + ID F AEDF++ GY+PH  I+M+MAV
Sbjct:  165 IDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313          
BLAST of CK936734 vs. ExPASy Swiss-Prot
Match: TYSY_EHV2 (Thymidylate synthase OS=Equine herpesvirus 2 (strain 86/87) GN=70 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.066e-54
Identity = 99/149 (66.44%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    4 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFARFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVGPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 450
            I +IK NP  RR+VL+AWNP+DL  MALPPCH+  +FY+A GELSCQ+YQRS DMGLGVPFNIASY+LLT M+AH+  L PGDFIHV+GDAHVY NHV PL+ QL + P+PFP L+I    +DID F AEDF L GY PH  I M+MAV
Sbjct:  141 IGEIKRNPESRRLVLTAWNPADLPAMALPPCHLLCQFYVAGGELSCQLYQRSGDMGLGVPFNIASYSLLTYMVAHLTGLEPGDFIHVLGDAHVYLNHVEPLKLQLTRSPRPFPRLRILRRVEDIDDFRAEDFALEGYHPHAAIPMEMAV 289          
The following BLAST results are available for this feature:
BLAST of CK936734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 406
Match NameE-valueIdentityDescription
DRTS2_ARATH4.395e-7686.58Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_SOYBN3.150e-7485.91Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_MAIZE2.042e-7385.91Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS1_ARATH4.548e-7383.89Bifunctional dihydrofolate reductase-thymidylate s... [more]
DRTS_ORYSJ1.463e-7183.89Putative bifunctional dihydrofolate reductase-thym... [more]
DRTS_DAUCA4.405e-6881.33Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_MOUSE9.527e-5565.10Thymidylate synthase OS=Mus musculus GN=Tyms PE=2 ... [more]
TYSY_RAT2.123e-5464.43Thymidylate synthase OS=Rattus norvegicus GN=Tyms ... [more]
TYSY_HUMAN3.620e-5465.10Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 ... [more]
TYSY_EHV28.066e-5466.44Thymidylate synthase OS=Equine herpesvirus 2 (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004518_G06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936734 ID=CK936734; Name=CK936734; organism=Citrus sinensis; type=EST; length=820bp
GGGATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGTACTCTC
GGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACA
TGTTTGCTCGGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTAT
CAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATA
TGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCG
ATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCGGG
CCCCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAA
GATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCA
AACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTA
TAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGG
CAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGC
AGAGTTTTATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTT
AAATAGTGCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGT
GGTTCTAAGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCAACTTTCA
TTTTCCCTTGTTACATGAAAACTATCACAGTATGTACTTCTGCTCNAAGT
CTCGAATGCTCTTTTTGAAAGAGATTNNNNNNCTTGGATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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