CK936707

Overview
NameCK936707
Unique NameCK936707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1637 contig Csv1_Contig1637:9..898. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CK936707 vs. ExPASy Swiss-Prot
Match: RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.364e-57
Identity = 117/182 (64.29%), Postives = 134/182 (73.63%), Query Frame = 2 
Query:  191 ARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLXXXXXXXXXXXXXXXXXPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQK 736
            + SL+ F + +K +    +  +     VK+Q L                 PTS  P   G +TA+EDK EPQCPPGLRQYETM VLRPDMSEDERL LTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRK+NKAGE+NTYLDGIYLLFTYFTKPESI  LE  + ADDD+IRSSSFK++K+K
Sbjct:   27 SHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGSDDD-PTS--PSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIKKRK 205
[Close]
BLAST of CK936707 vs. ExPASy Swiss-Prot
Match: RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPS6 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.662e-53
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 2 
Query:  353 PPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQK 736
            PP +     A+E+K EPQCPPGLRQYETM VLRPDM+EDERL LTQKYEELLVAGG MYVEVFNRGVIPLAYSI+++NKAGE+N YLDGIYLLFTYFTKPESI  LE  +  DDDVIRSSSFK+RK+K
Sbjct:   40 PPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRK 167
The following BLAST results are available for this feature:
BLAST of CK936707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR6_ARATH1.364e-5764.2930S ribosomal protein S6 alpha, chloroplastic OS=A... [more]
RR6_SPIOL2.662e-5378.1330S ribosomal protein S6 alpha, chloroplastic (Fra... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_A07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936707 ID=CK936707; Name=CK936707; organism=Citrus sinensis; type=EST; length=890bp
GGGGGCACCCGCGTTATCCACATTTCCCGATTTCCCCATACCCGAAGACC
CACTCTGCTCGAAACAGAGCTCAAAAGAAGAACAGAAAATGGCGAGCTCC
TCTCTCACGTCAGCTCTCACCTCTCAATCAAAATCTCCATTTTACCCTCA
GCAGCTCTCTCAGCTCCCTTCCTCACCTCTCTTCTCCTTCGCTCGCAGCC
TCAAAACTTTCCGTACAAACGCAAAATCTCTCCTTTTACACAAGAAGAAT
AGCAACTCTGTTTCTCTAACCGTCAAAGCACAAACCCTTGACTTCTCGGG
TTCGTTTTTCGAGGGCGGTGGATTCGGCTCGGACGATGACCCGACATCAG
TGCCACCCGGGTCGGTCGGAACCGCCACCGCTATCGAAGATAAAGAGGAG
CCACAGTGCCCACCTGGGTTAAGACAATACGAGACAATGATGGTCTTGAG
ACCCGACATGTCCGAAGATGAAAGACTCGCTCTCACTCAGAAGTACGAGG
AGTTGCTTGTTGCTGGGGGTGGCATGTATGTGGAGGTATTCAATAGAGGG
GTTATTCCATTGGCCTACAGCATCAGGAAGAGAAACAAAGCTGGGGAGTC
CAACACTTACTTGGATGGTATCTATCTCCTCTTCACCTACTTCACTAAAC
CAGAGTCAATAGAAGCTCTTGAGAGGACAATGAAAGCAGATGATGATGTT
ATCCGATCATCCAGTTTTAAAGTTAGGAAGCAGAAGCAGAAGGGTTAAAT
TATCTTGTATCTGTGGAAAAGAGGAGGTTCTGCTTGACGGTGTAATGTTA
TATGTAATGGATGTTTTTTCGGTAGAGGAAGGTTTTTAAATTCTATTGAT
ATATTTTTGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAA
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