CK936698

Overview
NameCK936698
Unique NameCK936698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length230
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:523..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.345e-28
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVE 230
            MMYQQGCFAGGTVLRLAKDLAEN+KGARVLVVCSEITAVTFRGPADTHLDSLVGQALF            PDTSVE
Sbjct:  158 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDTSVE 233          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.824e-28
Identity = 62/76 (81.58%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVE 230
            MMYQQGCFAGGTVLRLAKDLAEN+KGARVLVVCSEITAVTFRGP DTHLDSLVGQALF            PDTSVE
Sbjct:  158 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAVIVGADPDTSVE 233          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.387e-27
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVE 230
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGPADTHLDSLVGQALF            PD S+E
Sbjct:  160 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDESIE 235          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV 227
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDTSV
Sbjct:  162 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSV 236          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV 227
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDTSV
Sbjct:  163 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSV 237          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV 227
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDTSV
Sbjct:  159 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSV 233          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV 227
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDTSV
Sbjct:  163 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAAIIVGSDPDTSV 237          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.545e-27
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV 227
            MMYQQGCFAGGTVLR+AKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDTSV
Sbjct:  163 MMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSV 237          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.854e-27
Identity = 59/76 (77.63%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVE 230
            MMYQQGCFAGGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP DTHLDSLVGQALF            PD S+E
Sbjct:  160 MMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPVDTHLDSLVGQALFGDGAAAVIVGADPDESIE 235          
BLAST of CK936698 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.287e-26
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 MMYQQGCFAGGTVLRLAKDLAENSKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVE 230
            MMYQQGCF GGTVLRLAKDLAEN++GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            PDT++E
Sbjct:  161 MMYQQGCFPGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAALIVGADPDTAIE 236          
The following BLAST results are available for this feature:
BLAST of CK936698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS2_CITSI2.345e-2882.89Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_BETVE6.824e-2881.58Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS1_RUTGR3.387e-2778.95Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHSY_MATIN4.423e-2780.00Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSY_CARAN4.423e-2780.00Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHSY_ARAAL4.423e-2780.00Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHS3_SINAL4.423e-2780.00Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHSY_ARATH7.545e-2778.67Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHS3_RUTGR9.854e-2777.63Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_CHRAE1.287e-2676.32Chalcone synthase OS=Chrysosplenium americanum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_B02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936698 ID=CK936698; Name=CK936698; organism=Citrus sinensis; type=EST; length=230bp
TCATGATGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCTTCGCCTC
GCTAAAGACTTGGCTGAGAACAGCAAGGGCGCTCGCGTTCTTGTTGTCTG
TTCGGAGATCACGGCGGTCACTTTCCGCGGCCCTGCCGATACTCATCTTG
ATTCTCTTGTGGGCCAGGCTTTGTTCGGGGATGGTGCTGCTGCTGTGATC
GTGGGTGCCGATCCTGACACGTCGGTCGAG
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