CK936692

Overview
NameCK936692
Unique NameCK936692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936692_ssr67 microsatellite CK936692_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1953 contig Csv1_Contig1953:1..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 3.169e-45
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 2
Query:  413 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYDVNDTDCRAL-SRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 835
            E+LEASRAYW LE +GSRG SSMADFVE L RGR ++EQ    ++ ++HWQ+RI+ +SY+  +     L +RGL+G+SL+KLPC+++  E+   Q + C+ICLQDI  GE+ RSLP C HTFHL CVDKWLIRHGSCP+CR+
Sbjct:   78 EVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.892e-27
Identity = 64/142 (45.07%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  413 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQV-RIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 835
            E+ E+S   W  + +G      + D +  LL GR + E+  PA+L A   Q+  + S   D  D    A+S+GLTG+SL ++P   I D      S  CS+CLQD  VGE  RSLPHCHH FHL C+DKWL RH SCP+CRR
Sbjct:   80 EVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVS--CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRR 219          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.384e-24
Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = 2
Query:  413 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYDVNDT--DCRALSRGLTGESLKKLPCHVILDEIKPTQSS---CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 835
            E+ E+S   W  + +G      + D +  LL GR + E+  PA+L A   Q+     ++D + +  D    S+GLTG+ ++K+P   I        S     CS+CLQD  +GE  RSLPHCHH FHL C+D WL+RHGSCP+CRR
Sbjct:   95 EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGG-SKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRR 239          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.886e-22
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  413 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYD----VNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSS---CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 835
            E+ E+S   W    +       + D +  L+ GR + E+  PA+L A   Q+     +++    + DT     S+GLTG+ + K+P   I  +     S     CS+CLQD  +GE  RSLPHCHH FHL C+D WL RHGSCP+CRR
Sbjct:   90 EVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGG---SKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRR 234          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  590 DVNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 835
            D  DT+   +++G+   +LK +P      E+K   + C  ICL D + GE  R LP C+H FH+ C+D WL+ H SCP CR+
Sbjct:   77 DPVDTNAN-VAKGIKKRALKVIPVDSYSPELKMKATECL-ICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQ 156          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2
Query:  602 TDCRALSRGLTGESLKKLPCHVILDEIK-PTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 832
            T C + ++G+  ++L+  P      E+  P     C ICL D + GE  R LP CHH FH+ C+DKWL +H +CP CR
Sbjct:  101 TPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178          
BLAST of CK936692 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  626 GLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 832
            GL  ++++  P  +  +   PT +SCC+ICL D     L R LP C+H FHL C+D WL  + +CPVCR
Sbjct:  121 GLDEDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCR 189          
The following BLAST results are available for this feature:
BLAST of CK936692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ATL1Q_ARATH3.169e-4558.45RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
ATL5P_ARATH3.892e-2745.07RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL2B_ARATH1.384e-2440.41RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL4M_ARATH2.886e-2238.51RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL5B_ARATH4.619e-1240.24RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1I_ARATH4.619e-1241.03RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL2I_ARATH3.910e-1143.48RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936692 ID=CK936692; Name=CK936692; organism=Citrus sinensis; type=EST; length=837bp
GGGGAATCTAGGTACTTGTGTTTCTCTTTCCCCTTACAATTGAATCCACA
CAAAAAACATAATGAAAAATAAATAAATAAAGAGCCACCGAGATATTTTC
GAAATCCATCTCTTTTTGCACGTGATCCCTCGCTCATTCAGTAACCAATA
TACGCCGGCTTCTCGCCCTTGCGGTAGCTCCGCTTCAGCTCCGCCCGCCA
GCATGGATGATTTAGAATTCGAAGACCCCAACCTTTTCCAATCTATTCCC
AAATTCATCGCTGGCGCCATTTCTGGCACCCTCACTGGTCTCTTCGCTCT
GGCTGGAGCTTTCACAGGGGCAATTACGGGTGCTTTAGCCGGCAGGGCTT
CTGACTGTGGTGTTCTGCGAGGGGCTGGACTAGGTGCAATTGCCGGGGCT
GTACTCTCTGTTGAGCTTTTGGAGGCTTCTCGTGCTTACTGGTGTTTGGA
ACGGACTGGTTCTCGGGGCTCCTCGTCTATGGCAGACTTTGTTGAGGATC
TTCTCCGCGGGAGATTCATAGAGGAACAGTTTACTCCAGCCATATTAGGT
GCTTACCACTGGCAGGTAAGAATTGCTAGTATGAGTTACGATGTAAACGA
TACCGACTGTAGAGCTCTATCCAGAGGATTGACAGGAGAATCACTGAAAA
AATTACCTTGTCACGTGATCTTGGATGAAATCAAGCCAACACAGAGTAGC
TGCTGCTCTATATGTTTACAGGATATCATTGTTGGGGAACTTGCAAGGAG
CTTGCCTCATTGTCACCACACTTTTCATTTGGCATGTGTGGACAAGTGGC
TAATCAGACATGGCTCATGCCCTGTATGCAGACGGGA
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