CK936690 | Citrus Genome Database

Overview


Name	CK936690
Unique Name	CK936690
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	657

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK936690_ssr488	microsatellite	CK936690_ssr488:488..499.	BLAST: Citrus ESTs to TAIR9
Csv1_Contig7100	contig	Csv1_Contig7100:1201..1857.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_CITSI (50S ribosomal protein L33, chloroplastic OS=Citrus sinensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK
Sbjct:    1 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_BUXMI (50S ribosomal protein L33, chloroplastic OS=Buxus microphylla GN=rpl33 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.699e-32
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VRVRVILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVRVILECTSCVRNGVNKESLGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_DRIGR (50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.240e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VR+RVILECTSCVRN +NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRIRVILECTSCVRNDLNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_CERDE (50S ribosomal protein L33, chloroplastic OS=Ceratophyllum demersum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.991e-31
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VRVRVILECTSC RNG NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT HGEIKK
Sbjct:    1 MAKGKDVRVRVILECTSCARNGGNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTTHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_CARPA (50S ribosomal protein L33, chloroplastic OS=Carica papaya GN=rpl33 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+ RV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_EUCGG (50S ribosomal protein L33, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.896e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VRV VILECT+CVR G+NKESRG+SRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTNCVRTGLNKESRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_PLAOC (50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.235e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VRVRVILEC +CVRNGVNKES G+SRYITQKNRHNTPSRLELRKFCPYC+KHT+HGEIKK
Sbjct:    1 MAKGKDVRVRVILECINCVRNGVNKESPGVSRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_GOSHI (50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_GOSBA (50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.225e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66

[Close]

BLAST of CK936690 vs. ExPASy Swiss-Prot
Match: RK33_PANGI (50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 3

Query:  189 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 386
            MAKGK+VR+ VILECTSCVRNGVNK S GISRYITQKNRHNTP+RLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRITVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66

The following BLAST results are available for this feature:

BLAST of CK936690 vs. ExPASy Swiss-Prot

BLAST of CK936690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144


Match Name	E-value	Identity	Description
RK33_CITSI	3.126e-33	100.00	50S ribosomal protein L33, chloroplastic OS=Citrus...	[more]
RK33_BUXMI	7.699e-32	95.45	50S ribosomal protein L33, chloroplastic OS=Buxus ...	[more]
RK33_DRIGR	2.240e-31	92.42	50S ribosomal protein L33, chloroplastic OS=Drimys...	[more]
RK33_CERDE	4.991e-31	93.94	50S ribosomal protein L33, chloroplastic OS=Cerato...	[more]
RK33_CARPA	1.112e-30	90.91	50S ribosomal protein L33, chloroplastic OS=Carica...	[more]
RK33_EUCGG	1.896e-30	89.39	50S ribosomal protein L33, chloroplastic OS=Eucaly...	[more]
RK33_PLAOC	3.235e-30	89.39	50S ribosomal protein L33, chloroplastic OS=Platan...	[more]
RK33_GOSHI	4.225e-30	89.39	50S ribosomal protein L33, chloroplastic OS=Gossyp...	[more]
RK33_GOSBA	4.225e-30	89.39	50S ribosomal protein L33, chloroplastic OS=Gossyp...	[more]
RK33_PANGI	5.518e-30	89.39	50S ribosomal protein L33, chloroplastic OS=Panax ...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004519_C10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_C10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936690 ID=CK936690; Name=CK936690; organism=Citrus sinensis; type=EST; length=657bp
GGGCTTGTATTACTTANNNNTTTTTATTTTGATTTCCTATTTATTTACTA
TATCGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAG
CCGCGTGCTTTTGTGTCACCCTTCCAAGGGACATGAAAAACTAATCTAGA
TATATATCTAGATTATTTCATATATTTTAATAAAAACAAATAAATAAATC
TAGACAAACCAAATCCTATAATTGATTCTATAAATCATTTTTTGATTTCA
TCGAAATGGGATTTTAGGGATAAGGAATAAACAAATTATGGATAAAACCA
AGCGACTCTTTCTTAAATCCAAGCGATCTTTTCGTAGGCGTTTGCCCCCG
ATCCAAT