EL492600

Overview
NameEL492600
Unique NameEL492600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.208e-21
Identity = 46/55 (83.64%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLTT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:  220 DPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    6 RSDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            R DPLT++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:  220 RLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLT++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:  222 DPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.359e-20
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLTT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:  222 DPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.449e-19
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLTT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:  222 DPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLT +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:  220 DPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 176
            DPLT +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:  221 DPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of EL492600 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3
Query:   12 DPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 173
            DP TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct:  223 DPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
The following BLAST results are available for this feature:
BLAST of EL492600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_ARATH6.208e-2183.64Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_SOLTU1.806e-2078.95Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH1.806e-2085.45Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_SOLTU2.359e-2087.27Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA4.449e-1983.64Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ1.431e-1774.55Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT9.277e-1776.36Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE2.067e-1674.07Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC4031 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC4031, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492600 ID=EL492600; Name=EL492600; organism=Citrus sinensis; type=EST; length=352bp
GACTGCGTAGTGATCCCCTGACCACATTGAAGGCGCGAGTGAACAATGCT
GGCATTGCTAGTGCTCTCATCCAGCATGAGTGGCGTCCAAAGTCGTTGTT
CACCATTTCTGGTGAGGTGGACACCAAGGCCATTGAGAAGAGTGCCAAAT
TTGGACTGGCATTGGCTCTAAAGCCATAGTTGAGAGCTTGGTAGGTGTTG
GTAGGCATAGTTTAGCTGTCTGTTCAAAACTGATTATGTGTTTTGTTTTA
TCTCTTCTCAGTGGTTTTGAATTGTAAAATAAAATTGGAGGATCATAAAC
CTGTGTCATAACTTTTGAGGGCTTTTACAATTTCCAATTACTCAGGACTC
AT
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