CX675178

Overview
NameCX675178
Unique NameCX675178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12215 contig Csv1_Contig12215:366..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.145e-53
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = 2
Query:    2 GKPPAVLD-TTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDME 451
            GKPP  +D  +RY+LE+ PANKRND++AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQNE+IE VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+  +E
Sbjct:   95 GKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEEKLE 245          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 45/145 (31.03%), Postives = 84/145 (57.93%), Query Frame = 2
Query:    5 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 439
            +P  +L   RY+L    + +RND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  +KI+ +N +RK  Q      L  + + W  L +KN EI+ A   +E+ + +L++ + E+  N++
Sbjct:   77 QPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLVSKNYEIERAIVQMENEVYQLKERSGENKENIE 221          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_PONAB (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 43/141 (30.50%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    5 KPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 424
            +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:   77 QPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 217          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 41/140 (29.29%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    5 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 424
            +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:   77 QPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 41/140 (29.29%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    5 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 424
            +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:   77 QPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 39/139 (28.06%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    5 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 421
            +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R+ENLELM+++G   W+  N  L  ++   Q+  Q   ++I+ +N +RK  Q     +L  L + W  L +KN EI+ A   +E+ + +++++  +
Sbjct:   77 QPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQYGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVSKNYEIERAIVQLENEVAQMKQQQGD 215          
BLAST of CX675178 vs. ExPASy Swiss-Prot
Match: SPF27_DICDI (Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 41/130 (31.54%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   23 DTTRYQLEILPA--NKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR 406
            D  RY++E       ++ +E  W  +L  A+   +HQ IR  NLEL+ ++G   W+ +   LE L   +++   ++ ++IE +N +RK  Q+ T  ++     ++ EL  KN EI++AC +IE  IE+L+
Sbjct:   80 DIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLELLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKFLELVYKNTEIESACKSIELEIEQLK 209          
The following BLAST results are available for this feature:
BLAST of CX675178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPF27_ARATH1.145e-5367.55Pre-mRNA-splicing factor SPF27 homolog OS=Arabidop... [more]
SPF27_XENTR7.014e-1931.03Pre-mRNA-splicing factor SPF27 OS=Xenopus tropical... [more]
SPF27_PONAB1.728e-1730.50Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=... [more]
SPF27_MOUSE1.728e-1729.29Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=... [more]
SPF27_HUMAN1.728e-1729.29Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=... [more]
SPF27_DANRE6.565e-1728.06Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=b... [more]
SPF27_DICDI4.404e-1331.54Pre-mRNA-splicing factor spf27 OS=Dictyostelium di... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60D04-G8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675178 ID=CX675178; Name=CX675178; organism=Citrus sinensis; type=EST; length=737bp
CGGGAAGCCTCCTGCGGTGCTTGATACTACACGGTATCAATTGGAAATTC
TGCCGGCGAATAAGAGAAATGATGAATCTGCTTGGAAGCAGGCACTTCAG
AAAGCTCAGCGCTTATCGCAGCATCAATTGATCAGGCTGGAAAATTTGGA
GTTGATGTCTAAACATGGTCCTGAAGTCTGGAGGCAGCACAATCAACGAT
TGGAAGCATTACTATTGGGAATGCAGAGATTAGCTCAGGAGCAAAATGAA
AAGATTGAAGCTGTAAATCGTGAAAGAAAATATCATCAGCAAAATACTGC
ATATGAGTTGAATGCTTTGTCCACACAATGGAGGGAGCTTTGTGCCAAAA
ATATAGAAATCCAAGCTGCTTGTGCAAATATTGAAAGTCACATAGAGGAA
TTGAGGAAAGAAGCTGCTGAGAGTGGCTGGAACTTAGATATTGATATGGA
GAAAGGGTTTTTGGCGCAATCAGGACAGGTCCACTAGAAGATTTGGCAGC
GTTCAACCATGGTGATATGTACAAAGGAGTGGTCTCCATCCCAGTTTTCT
TTTAGTGGGTTGCTGCAGGCCCCTTTAGATATGAGATTACTCGGTTTTAG
TTCTGTTGCAGTTATATGGCAAGAACCTTTCTGAAATTTGAGGAAAAAAC
TCGATGTGCTTCCTCCACTATCGGTCTACATGGAGAACTCTGATGCAACA
TAAATCTATCGCACTATAAGAAACATGAGCAAAAAAA
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