CK936686

Overview
NameCK936686
Unique NameCK936686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936686_ssr175 microsatellite CK936686_ssr175:175..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1028 contig Csv1_Contig1028:86..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936686 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3 
Query:  246 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEA 365
            ++EL+QVF HFD DGDGKISA ELR YFGS+GEY+S+E A
Sbjct:   62 KEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAA 101
The following BLAST results are available for this feature:
BLAST of CK936686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML41_ARATH5.716e-1172.50Probable calcium-binding protein CML41 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936686 ID=CK936686; Name=CK936686; organism=Citrus sinensis; type=EST; length=366bp
TTGTTAAGAGTGTTATATATTGACATATCCATTAACAAGGAAAACATATG
GCAACCGATGATAACAAGGTTGCAGGTTCTAAGCCATCTAATTCTAAGTG
GTTCTTTTCTAACAAGGGTCATGGGTTAAGCCTTCACCGTCGTCGATCAA
AGTCAAAGTCTAGTTCTTCATCGTCAACAACAACAACAACATTAAGCTCT
CCAAACTCCTCCTTGTCTGCATGCGAACCCAAAAAGATCACAAAAGAAGA
TGAGTTGAAGCAAGTCTTTCGTCATTTTGATGGTGATGGAGACGGGAAAA
TTTCGGCTCTCGAACTTAGGGCTTACTTTGGTTCCATTGGTGAGTACATG
TCATACGAAGAGGCTC
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