CX675177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.154e-53 Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = -2 Query: 288 GKPPAVLD-TTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDME 737 GKPP +D +RY+LE+ PANKRND++AWKQ LQK QR Q +LI LENLELMSK GPE+WRQ+N RLE L MQRLAQEQNE+IE VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+ +KEAAE GWNL+ +E Sbjct: 95 GKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEEKLE 245
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19 Identity = 45/145 (31.03%), Postives = 84/145 (57.93%), Query Frame = -2 Query: 300 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 734 +P +L RY+L + +RND +AW++ + + +HQ +R+ENLELMS+HG W+ +N+ L ++ Q+ Q+ +KI+ +N +RK Q L + + W L +KN EI+ A +E+ + +L++ + E+ N++ Sbjct: 77 QPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLVSKNYEIERAIVQMENEVYQLKERSGENKENIE 221
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_PONAB (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17 Identity = 43/141 (30.50%), Postives = 81/141 (57.45%), Query Frame = -2 Query: 315 KPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 734 +P +L RY+L P+ K+ND +AW++ + + +HQ +R+ENLELMS+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W L +KN EI+ +E+ I +++++ E+ Sbjct: 77 QPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 217
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17 Identity = 41/140 (29.29%), Postives = 80/140 (57.14%), Query Frame = -2 Query: 315 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 734 +P +L RY+L + ++ND +AW++ + + +HQ +R+ENLELMS+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W L +KN EI+ +E+ I +++++ E+ Sbjct: 77 QPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17 Identity = 41/140 (29.29%), Postives = 80/140 (57.14%), Query Frame = -2 Query: 315 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 734 +P +L RY+L + ++ND +AW++ + + +HQ +R+ENLELMS+HG W+ +N+ L ++ Q+ Q+ + I+ +N +RK Q +L + + W L +KN EI+ +E+ I +++++ E+ Sbjct: 77 QPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17 Identity = 39/139 (28.06%), Postives = 77/139 (55.40%), Query Frame = -2 Query: 318 KPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 734 +P +L RY+L + ++ND +AW+ + + +HQ +R+ENLELM+++G W+ N L ++ Q+ Q ++I+ +N +RK Q +L L + W L +KN EI+ A +E+ + +++++ + Sbjct: 77 QPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQYGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVSKNYEIERAIVQLENEVAQMKQQQGD 215
BLAST of CX675177 vs. ExPASy Swiss-Prot
Match: SPF27_DICDI (Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27 PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13 Identity = 41/130 (31.54%), Postives = 73/130 (56.15%), Query Frame = -2 Query: 333 DTTRYQLEILPA--NKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR 716 D RY++E ++ +E W +L A+ +HQ IR NLEL+ ++G W+ + LE L +++ ++ ++IE +N +RK Q+ T ++ ++ EL KN EI++AC +IE IE+L+ Sbjct: 80 DIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLELLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKFLELVYKNTEIESACKSIELEIEQLK 209 The following BLAST results are available for this feature:
BLAST of CX675177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675177 ID=CX675177; Name=CX675177; organism=Citrus sinensis; type=EST; length=741bpback to top |