CK936681

Overview
NameCK936681
Unique NameCK936681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.540e-44
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1
Query:   40 MAQTLPNTFFQIKPSAPILPTRKVKNCAATGSGYRTR-------VVTCRKKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 414
            MA +LPN+F QI P  P L  RK    A  G     R        +TCRKK++HP+F+EDAK YCNGELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:    1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_SYNP6 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 366
            K DIHPQ+Y +AK YCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_SYNE7 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 366
            K DIHPQ+Y +AK YCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_PROMA (50S ribosomal protein L31 OS=Prochlorococcus marinus GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 360
            KKDIHP +Y DAK  CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_THEEB (50S ribosomal protein L31 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFGG 363
            K +IHPQ+Y +AK YC+GE++MT G T+ E  VD+WSGNH F+ G +   +VDA+ +VE+FR+K+ G
Sbjct:    3 KPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPFFTGTQK--IVDAEGRVERFRRKYSG 67          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_NOSP7 (50S ribosomal protein L31 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 360
            K DIHP++Y DAK YCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KADIHPKWYPDAKVYCNGQVVMTIGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_ANAVT (50S ribosomal protein L31 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 360
            K DIHP++Y +AK YCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_ANASP (50S ribosomal protein L31 OS=Anabaena sp. (strain PCC 7120) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 360
            K DIHP++Y +AK YCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_ACAM1 (50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 360
            K DIHP++Y +AK YC+GE+VMT G TQ+E  VDVWSGNH F+ G +  +  +  +VE+F +K+G
Sbjct:    3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQKIIDTEG-RVERFMRKYG 66          
BLAST of CK936681 vs. ExPASy Swiss-Prot
Match: RL31_SYNP2 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1
Query:  166 KKDIHPQFYEDAKAYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLS 369
            K DIHP++Y DAK  CNGE+VMT G TQ E  V++WSGNH FY G +  +  +  +V++F +K+G LS
Sbjct:    3 KADIHPEWYPDAKVICNGEVVMTIGSTQPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRFLRKYGMLS 69          
The following BLAST results are available for this feature:
BLAST of CK936681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK31_ARATH1.540e-4465.9150S ribosomal protein L31, chloroplastic OS=Arabid... [more]
RL31_SYNP65.707e-1556.7250S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNE75.707e-1556.7250S ribosomal protein L31 OS=Synechococcus elongat... [more]
RL31_PROMA1.271e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_THEEB2.169e-1452.2450S ribosomal protein L31 OS=Thermosynechococcus e... [more]
RL31_NOSP72.169e-1453.8550S ribosomal protein L31 OS=Nostoc punctiforme (s... [more]
RL31_ANAVT3.699e-1452.3150S ribosomal protein L31 OS=Anabaena variabilis (... [more]
RL31_ANASP3.699e-1452.3150S ribosomal protein L31 OS=Anabaena sp. (strain ... [more]
RL31_ACAM13.699e-1452.3150S ribosomal protein L31 OS=Acaryochloris marina ... [more]
RL31_SYNP24.831e-1451.4750S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_D09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936681 ID=CK936681; Name=CK936681; organism=Citrus sinensis; type=EST; length=609bp
GGGGACACTCGCCCTCGCAATAAACGCACAGTACGGAAAATGGCGCAGAC
TTTGCCCAACACATTCTTCCAAATCAAACCCTCTGCTCCAATTCTCCCCA
CCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGACCCGG
GTGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGGATGC
AAAGGCGTACTGTAACGGTGAGCTCGTAATGACGACGGGTGGGACCCAGA
AGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCTCGGC
GGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCCGTCA
GAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAAGGAG
AGATTGTGTTGCCGCCTAAGCGCAGGTCCGCGGCCTCTAAAGGTGGCAAG
AAGAAGTAGAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGAATGT
TTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGATATTTGAAC
GACAAACATTATTATCAAATTATCTTTTTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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