CK936678

Overview
NameCK936678
Unique NameCK936678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig953 contig Csv1_Contig953:69..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936678 vs. ExPASy Swiss-Prot
Match: MBB1_CHLRE (PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.872e-18
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 2 
Query:  365 SSGEKPLTVNLDLALYKAKI--------LTKNFR---YQEAEEILEKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGR 658
            +   K L +N+DL L++ +         L  N R   Y+ AE+ L +C+   P D R YV LGK L +Q +  EAR +Y  G   T   NPYIW  W  LE + GN+ R
Sbjct:  106 AGSSKVLKINIDLLLWRCRTSRIRARQTLDLNERKSLYKAAEDGLRRCLALDPADPRAYVVLGKTLVQQKRYDEARQLYQDGCANTGNVNPYIWSAWGWLEARTGNVER 214

HSP 2 Score: 39.2762 bits (90), Expect = 8.872e-18
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 1 
Query:  658 ARELFDASTVADKGHIAAWHGWAVLELRQG 747
            AR+L+DA+ V D  H  AWH W +LE  QG
Sbjct:  215 ARKLYDAAVVVDGTHACAWHKWGMLEKGQG 244
The following BLAST results are available for this feature:
BLAST of CK936678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MBB1_CHLRE8.872e-1837.61PsbB mRNA maturation factor Mbb1, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_D06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936678 ID=CK936678; Name=CK936678; organism=Citrus sinensis; type=EST; length=777bp
GGGGAATCTCTTTACTTCTTCACAAAACATCAACAAACATATCTCCAAAT
TCCCCTTTATAATCCCATGCAAAACAACCCATCTCACATTGCCTCCATGT
TACTCACAACAAAAATCATCGCACAACACCAAGACAGAAGCTGTCAAGAA
TGCTGATGTCGGTATCGAAGAGAAGGAAGACTCATTTAATAAAGATCGTC
TTGTGGTTCGGAGGCCGGTGAAGGAGCTCTCAGATGAAGAAGTTGGTGAC
GTGGCCGGTAGCGGGGGCGGCGATGGTGGGGTTAATTCATCTGGGATCAT
AGACGCCACTCTTAATGAGTTTGCGAAGAAGATGCCAATGTTTGAACCGG
AGAGAATGGAATCTAGTTCTGGTGAGAAGCCGCTTACAGTCAACTTGGAC
TTGGCCTTGTATAAAGCTAAGATTTTGACCAAGAATTTTAGATACCAAGA
AGCCGAGGAGATTCTTGAGAAGTGTATAGATTATTGGCCAGAGGATGGGA
GGCCGTATGTAGCACTGGGGAAGGTACTAAGCAAGCAATCAAAAGTAGCA
GAAGCTAGAGCTATTTATGCCAAAGGTAGCCAGGCTACCCAAGGAGAGAA
TCCTTATATTTGGCAGTGTTGGGCTGTTTTGGAAAATAAGCTAGGGAATA
TAGGGAGGCAAGAGAGTTATTTGATGCTTCAACAGTTGCTGATAAAGGAC
ACATTGCTGCGTGGCATGGATGGGCAGTTCTAGAGCTGAGACAGGGTATA
TCAAGAAGGCTAGGCAGCTGCTCGCTA
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