CK936671

Overview
NameCK936671
Unique NameCK936671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1951 contig Csv1_Contig1951:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936671 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.436e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  113 MEYTTKRSQGGLLEGLYRVIMRRNSIYVTFIIAGAFAGERAVDYGVRKIWEHNNVGKRYEDIPVLGQRQSEE 328
            ME   +RS GG+LEG YR++MRR  +YVTF+IAGA  GERAVDYGV+ +WE NNVGKRYEDI VLGQR  +E
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYEDISVLGQRPVDE 72
The following BLAST results are available for this feature:
BLAST of CK936671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU7.436e-2368.06Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936671 ID=CK936671; Name=CK936671; organism=Citrus sinensis; type=EST; length=610bp
GGGGGCAGCCTCATTTGACGTATTCTCTGCGGTCGAGATCTCTCTGCGAA
CCCTAAATCAACCACTGTATTACAGATCAATCAGAGCGACTCGAATTCCT
GAGCGAACAGCCATGGAGTATACAACCAAACGAAGCCAAGGAGGCCTCCT
CGAAGGTCTTTACAGAGTCATTATGCGCCGCAACTCCATCTACGTAACCT
TCATCATCGCCGGTGCTTTCGCTGGTGAACGGGCTGTGGATTATGGGGTT
CGCAAAATCTGGGAGCACAACAATGTCGGGAAACGATATGAAGACATTCC
AGTTTTGGGGCAAAGGCAATCAGAAGAGTAGTACCTCTCCTGCTCATTCT
GAAGTTTTATATAAAAAATTTGGAAGGGGCGTCCAATGTAATGGATAGCT
GTTTTATGTTGCAATAAATTTTTTGTATGCTTGAGTGCATCAGACGTGTT
TTTCAAGCTTGGTTTCAATCAAATAGGTTTTGGAGCTATTGAATTGATGT
GAATTGCGTATTGCTTCGACTATTTGTCCGAGAACGTGTTCTTGCACTTG
TTCAGTTTATAGAACATTAATTTGAATTATAAAAAAAAAAAAAAAAAAAN
AAAAAAAAAA
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