CK936670

Overview
NameCK936670
Unique NameCK936670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.209e-85
Identity = 160/218 (73.39%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    2 SSASKFHGRFPALSSSSYVRPTYPNPINVNGVVSVKAAAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            SSAS FHGRF  L++ S  R   P   NV     VK +A G VLVEKSEAEKT RLKT YLE+I+P L+EEF Y NIHQVPK++KIVVNCGIGDAAQN KGLEAAM D+ALITGQ+P+KTRAR SIATFKIRE +PLGIAVTLRG++MYSFLDRLINL LPRTRDFQGV+P+SFDG+GNYSIGVK+  VFPEIR+DA+GK +GMDVCI+TTAK+D+ G
Sbjct:    9 SSASSFHGRFSPLAAPSSARMLSPPLRNV-----VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEG 221          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.135e-75
Identity = 138/179 (77.09%), Postives = 160/179 (89.39%), Query Frame = 2
Query:  113 AAGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDK 649
            AAG  V V+K+EAE   RLKT Y+EK+VPLL+EEFSY+NI +VPK+ KIVVNCGIGDA+QNAKGL+AA+N+LALITGQRPVKT+A+ SIA FK+REG  LGIAVTLRGN+MYSFLDRLINL LPRTRDFQGVNPNSFDGHGNYS+G +E SVFPEI+ + +GK +GMDVCITTTAKTDK
Sbjct:    1 AAGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDK 179          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 6.667e-68
Identity = 122/175 (69.71%), Postives = 148/175 (84.57%), Query Frame = 2
Query:  122 GIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTD 646
            GIVLV+ +EA+K  RLK  Y +K+VPL+ EEF YTN+HQVPK+EKIVVNCG+G  A N+KGLE+AM DLA+ITGQ PVKT+A+ S+A+FKIREG  +GIAVTLRG +M++FLDRLINLGLPRT DF GVNPNSFDGHGN++IG+++  VFPEI Y+  GK  GMDVCI TTAKTD
Sbjct:   63 GIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTAKTD 237          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_SYNY3 (50S ribosomal protein L5 OS=Synechocystis sp. (strain PCC 6803) GN=rplE PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 104/166 (62.65%), Postives = 133/166 (80.12%), Query Frame = 2
Query:  158 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            T RLKT Y E I+P L+EEF Y NIHQVPK+ K+ VN G+G+A+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIREG P+G+ VTLR   MY+FLDRLINL LPR RDF+G++PNSFDG GNYS+G++E  +FPEI YD + + +GMDV I T+A+TD+ G
Sbjct:    2 TQRLKTLYQETILPKLQEEFGYKNIHQVPKLTKVTVNRGLGEASQNAKALESSLTELATITGQKPVVTRARKAIAGFKIREGMPVGVMVTLRSERMYAFLDRLINLALPRIRDFRGISPNSFDGRGNYSLGIREQLIFPEIDYDTIDQIRGMDVSIITSAQTDEEG 167          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_CYAP4 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplE PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 2
Query:  164 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            RLKT YLE  VP L E+F Y NIHQVPK+ KI +N G+G+AAQNAK LEA++N++ALI GQ+PV TRA+ +IA FKIR+G P+GI VTLR + MY+F DRLINL LPR RDF+GVNP SFDG GNYS+G++E  +FPEI YD++ + +GMDV I TTA TD+ G
Sbjct:    4 RLKTYYLENAVPKLMEQFKYKNIHQVPKLVKITINRGLGEAAQNAKSLEASLNEIALIAGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRSDRMYAFFDRLINLALPRIRDFRGVNPKSFDGRGNYSLGLREQLIFPEISYDSIDQMRGMDVSIITTATTDEEG 167          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_MICAN (50S ribosomal protein L5 OS=Microcystis aeruginosa (strain NIES-843) GN=rplE PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.432e-56
Identity = 103/164 (62.80%), Postives = 133/164 (81.10%), Query Frame = 2
Query:  164 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            +LKTTY E IVP L+E+F YTNIHQVPK+ KI VN G+G+A+QNAK LE++  +L+ ITGQ+PV TRA+ +IA FKIREG P+G+ VTLRG+ MY+FLDRLINL LPR RDF+G++ NSFDG GNYS+G++E  +FPEI YD + + +GMD+ I TTAK D+ G
Sbjct:    4 KLKTTYQETIVPKLKEQFGYTNIHQVPKVIKITVNRGLGEASQNAKALESSKAELSTITGQQPVVTRAKKAIAGFKIREGMPVGVMVTLRGDRMYAFLDRLINLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIEYDKIDQIRGMDISIITTAKNDEEG 167          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_CYAP7 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 7424) GN=rplE PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.854e-56
Identity = 103/166 (62.05%), Postives = 134/166 (80.72%), Query Frame = 2
Query:  158 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            T RLKT Y E IVP L+E+F+YTNIHQVPK+ K+ VN G+GDA+QNAK LE+++ +LA ITGQ+PV TRAR +IA FKIR+G P+G+ VTLR   MY+FLDRLI+L LPR RDF+G++ NSFDG GNYS+G++E  +FPEI YD + + +GMD+ I TTA+TD+ G
Sbjct:    2 TQRLKTVYYETIVPKLKEQFNYTNIHQVPKVIKVTVNRGLGDASQNAKALESSIAELATITGQKPVVTRARKAIAGFKIRKGMPVGVMVTLRSERMYAFLDRLISLALPRIRDFRGISGNSFDGRGNYSLGIREQLIFPEIDYDKIDQIRGMDISIITTAQTDEEG 167          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RK5_MESVI (50S ribosomal protein L5, chloroplastic OS=Mesostigma viride GN=rpl5 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.986e-56
Identity = 102/164 (62.20%), Postives = 130/164 (79.27%), Query Frame = 2
Query:  164 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            RLKT YLE  V  L+E F Y N HQ+P+I+KIV+NCG+ +A+QN+K LE+AM +L++I GQ+ V TRA+ +IA FKIREG P+GI +TLRG+ MY+FLDRLINL LPR RDFQGV+  SFDGHGNY++G+KE  +FPEI YD + K +GMD+CI T AKTD  G
Sbjct:    4 RLKTLYLESAVLKLQETFGYKNPHQIPRIKKIVINCGLSEASQNSKSLESAMKELSIIAGQKGVITRAKKAIAGFKIREGLPIGICITLRGDSMYAFLDRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDICIVTNAKTDSEG 167          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_ANASP (50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55
Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = 2
Query:  158 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            T RLKT Y E IVP L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG  MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+E  +FPEI YD++ + +G+D+ I TTAK D+ G
Sbjct:    3 TTRLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYDSIDQIRGLDISIITTAKNDEEG 168          
BLAST of CK936670 vs. ExPASy Swiss-Prot
Match: RL5_ANAVT (50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.225e-55
Identity = 100/166 (60.24%), Postives = 132/166 (79.52%), Query Frame = 2
Query:  158 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKE*SVFPEIRYDALGKPKGMDVCITTTAKTDKRG 655
            T RLKT Y E I+P L ++F YTN+HQVPK+ KI VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+GI VTLRG  MY+F DRLI+L LPR RDF+G++P SFDG GNY++GV+E  +FPEI YD++ + +G+D+ I TTAK D+ G
Sbjct:    3 TTRLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIRDFRGISPKSFDGRGNYTLGVREQLIFPEIEYDSIDQIRGLDISIITTAKNDEEG 168          
The following BLAST results are available for this feature:
BLAST of CK936670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_ARATH1.209e-8573.3950S ribosomal protein L5, chloroplastic OS=Arabido... [more]
RK5_SPIOL1.135e-7577.0950S ribosomal protein L5, chloroplastic OS=Spinaci... [more]
RK5_ORYSJ6.667e-6869.7150S ribosomal protein L5, chloroplastic OS=Oryza s... [more]
RL5_SYNY31.180e-5662.6550S ribosomal protein L5 OS=Synechocystis sp. (str... [more]
RL5_CYAP41.180e-5664.0250S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RL5_MICAN3.432e-5662.8050S ribosomal protein L5 OS=Microcystis aeruginosa... [more]
RL5_CYAP75.854e-5662.0550S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RK5_MESVI9.986e-5662.2050S ribosomal protein L5, chloroplastic OS=Mesosti... [more]
RL5_ANASP1.703e-5560.8450S ribosomal protein L5 OS=Anabaena sp. (strain P... [more]
RL5_ANAVT2.225e-5560.2450S ribosomal protein L5 OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936670 ID=CK936670; Name=CK936670; organism=Citrus sinensis; type=EST; length=655bp
CTCCTCTGCGTCGAAATTTCACGGCCGATTCCCCGCTCTCTCATCTTCAT
CATATGTACGGCCCACATATCCAAACCCTATAAATGTGAATGGGGTGGTC
TCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTGGTGGAGAAATCCGAAGC
AGAGAAGACCGGGCGGCTCAAAACCACGTATCTCGAAAAGATTGTTCCTT
TGCTCAGAGAAGAGTTTTCCTATACTAACATTCACCAGGTTCCGAAGATT
GAGAAGATTGTTGTGAATTGTGGTATTGGAGATGCTGCTCAGAATGCAAA
AGGCCTGGAGGCGGCAATGAATGACTTGGCACTCATTACAGGTCAGAGAC
CTGTAAAGACGCGAGCAAGGAATTCCATTGCCACCTTCAAGATCAGGGAA
GGCGAACCACTTGGAATTGCTGTCACACTCAGAGGAAATATGATGTACTC
ATTTCTAGACCGTCTTATTAATTTGGGGCTTCCTAGAACAAGGGATTTCC
AAGGTGTGAATCCCAATAGCTTTGATGGACATGGGAATTACAGCATTGGT
GTTAAAGAATAGAGTGTTTTCCCGGAGATCAGGTATGATGCTCTTGGCAA
GCCCAAGGGAATGGATGTTTGCATTACAACAACCGCCAAAACTGATAAAA
GAGGC
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